共 114 条
Quantitative proteomics as a new piece of the systems biology puzzle
被引:62
作者:

Bachi, Angela
论文数: 0 引用数: 0
h-index: 0
机构:
Ist Sci San Raffaele, DIBIT, I-20132 Milan, Italy European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Bonaldi, Tiziana
论文数: 0 引用数: 0
h-index: 0
机构:
European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy
机构:
[1] European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy
[2] Ist Sci San Raffaele, DIBIT, I-20132 Milan, Italy
关键词:
Quantitative proteomics;
Mass spectrometry;
Stable-isotope labeling;
System biology;
Gene-phenotypization;
D O I:
10.1016/j.jprot.2008.07.001
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
The definition of the role of each gene product in its cellular context is of outstanding importance in the post-genomics era. Recent technological innovations have driven research in proteomics from single protein characterization to global approaches, aiming to achieve a comprehensive qualitative and quantitative description of complex molecular mechanisms. In this review, we discuss the methodology of quantitative proteomics as it applies to the analysis of complex biological model systems. A special attention will be given to model systems that are suitable for functional genomic studies, where the potential of quantitative proteomics can be effectively demonstrated. (C) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:357 / 367
页数:11
相关论文
共 114 条
- [1] In vitro and in silico processes to identify differentially expressed proteins[J]. PROTEOMICS, 2004, 4 (08) : 2333 - 2351Allet, N论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandBarrillat, N论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandBaussant, T论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandBoiteau, C论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandBotti, P论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandBougueleret, L论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandBudin, N论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandCanet, D论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandCarraud, S论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandChiappe, D论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandChristmann, N论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandColinge, J论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandCusin, I论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandDafflon, N论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandDepresle, B论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandFasso, I论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandFrauchiger, P论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandGaertner, H论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandGleizes, A论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandGonzalez-Couto, E论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandJeandenans, C论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandKarmime, A论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandKowall, T论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandLagache, S论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandMahé, E论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandMasselot, A论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandMattou, H论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandMoniatte, M论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandNiknejad, A论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandPaolini, M论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandPerret, F论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandPinaud, N论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRanno, F论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRaimondi, S论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandReffas, S论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRegamey, PO论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRey, PA论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRodriguez-Tomé, P论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRose, K论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandRossellat, G论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandSaudrais, C论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandSchmidt, C论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandVillain, M论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, SwitzerlandZwahlen, C论文数: 0 引用数: 0 h-index: 0机构: GeneProt Inc, CH-1217 Meyrin, Switzerland GeneProt Inc, CH-1217 Meyrin, Switzerland
- [2] Comparative LC-MS: A landscape of peaks and valleys[J]. PROTEOMICS, 2008, 8 (04) : 731 - 749America, Antoine H. P.论文数: 0 引用数: 0 h-index: 0机构: Univ Wageningen & Res Ctr, NL-6700 AA Wageningen, Netherlands Univ Wageningen & Res Ctr, NL-6700 AA Wageningen, NetherlandsCordewener, Jan H. G.论文数: 0 引用数: 0 h-index: 0机构: Univ Wageningen & Res Ctr, NL-6700 AA Wageningen, Netherlands Univ Wageningen & Res Ctr, NL-6700 AA Wageningen, Netherlands
- [3] Proteomic characterization of the human centrosome by protein correlation profiling[J]. NATURE, 2003, 426 (6966) : 570 - 574Andersen, JS论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, DenmarkWilkinson, CJ论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, DenmarkMayor, T论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, DenmarkMortensen, P论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, DenmarkNigg, EA论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, DenmarkMann, M论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, Dept Biochem & Mol Biol, Ctr Expt Bioinformat, DK-5230 Odense M, Denmark
- [4] Analysis of protein phosphorylation by mass spectrometry[J]. EUROPEAN JOURNAL OF MASS SPECTROMETRY, 2004, 10 (03) : 383 - 392Areces, LB论文数: 0 引用数: 0 h-index: 0机构: European Inst Oncol, I-20141 Milan, ItalyMatafora, V论文数: 0 引用数: 0 h-index: 0机构: European Inst Oncol, I-20141 Milan, ItalyBachi, A论文数: 0 引用数: 0 h-index: 0机构: European Inst Oncol, I-20141 Milan, Italy
- [5] Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics[J]. SCIENCE, 2008, 320 (5878) : 938 - 941论文数: 引用数: h-index:机构:Grossmann, Jonas论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Funct Genom Ctr Zurich, CH-8057 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandGrobei, Monica A.论文数: 0 引用数: 0 h-index: 0机构: Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Univ Zurich, Inst Plant Biol, CH-8008 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandHull, Roger论文数: 0 引用数: 0 h-index: 0机构: Univ Manchester, Fac Life Sci, Manchester M13 9PL, Lancs, England ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandHirsch-Hoffmann, Matthias论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandYalovsky, Shaul论文数: 0 引用数: 0 h-index: 0机构: Tel Aviv Univ, Dept Plant Sci, IL-69978 Tel Aviv, Israel ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandZimmermann, Philip论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandGrossniklaus, Ueli论文数: 0 引用数: 0 h-index: 0机构: Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Univ Zurich, Inst Plant Biol, CH-8008 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandGruissem, Wilhelm论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Funct Genom Ctr Zurich, CH-8057 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, SwitzerlandBaginsky, Sacha论文数: 0 引用数: 0 h-index: 0机构: ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland ETH, Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland
- [6] Quantitative mass spectrometry in proteomics: a critical review[J]. ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2007, 389 (04) : 1017 - 1031Bantscheff, Marcus论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69254 Heidelberg, Germany Cellzome AG, D-69254 Heidelberg, GermanySchirle, Markus论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69254 Heidelberg, Germany Cellzome AG, D-69254 Heidelberg, GermanySweetman, Gavain论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69254 Heidelberg, Germany Cellzome AG, D-69254 Heidelberg, GermanyRick, Jens论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69254 Heidelberg, Germany Cellzome AG, D-69254 Heidelberg, GermanyKuster, Bernhard论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69254 Heidelberg, Germany Cellzome AG, D-69254 Heidelberg, Germany
- [7] A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling[J]. NATURE BIOTECHNOLOGY, 2003, 21 (03) : 315 - 318Blagoev, B论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkKratchmarova, I论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkOng, SE论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkNielsen, M论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkFoster, LJ论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, DenmarkMann, M论文数: 0 引用数: 0 h-index: 0机构: Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark Univ So Denmark, CEBI, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark
- [8] PhosphoPep-a phosphoproteome resource for systems biology research in Drosophila Kc167 cells[J]. MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)Bodenmiller, Bernd论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandMalmstrom, Johan论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandGerrits, Bertran论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandCampbell, David论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandLam, Henry论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandSchmidt, Alexander论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandRinner, Oliver论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandMueller, Lukas N.论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandShannon, Paul T.论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandPedrioli, Patrick G.论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandPanse, Christian论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandLee, Hoo-Keun论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, SwitzerlandSchlapbach, Ralph论文数: 0 引用数: 0 h-index: 0机构: Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, Switzerland论文数: 引用数: h-index:机构:
- [9] Genome-wide RNAi analysis of growth and viability in Drosophila cells[J]. SCIENCE, 2004, 303 (5659) : 832 - 835Boutros, M论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USAKiger, AA论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USAArmknecht, S论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USAKerr, K论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USAHild, M论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USAKoch, B论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA论文数: 引用数: h-index:机构:Paro, R论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USAPerrimon, N论文数: 0 引用数: 0 h-index: 0机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA
- [10] Analysis of cell-based RNAi screens[J]. GENOME BIOLOGY, 2006, 7 (07)Boutros, Michael论文数: 0 引用数: 0 h-index: 0机构: German Canc Res Ctr, D-69120 Heidelberg, GermanyBras, Ligia P.论文数: 0 引用数: 0 h-index: 0机构: German Canc Res Ctr, D-69120 Heidelberg, Germany论文数: 引用数: h-index:机构: