The human mycobiome in health and disease

被引:253
作者
Cui, Lijia [1 ]
Morris, Alison [2 ,3 ]
Ghedin, Elodie [1 ,4 ]
机构
[1] Univ Pittsburgh, Sch Med, Ctr Vaccine Res, Pittsburgh, PA 15261 USA
[2] Univ Pittsburgh, Sch Med, Dept Med, Div Pulm Allergy & Crit Care Med, Pittsburgh, PA 15213 USA
[3] Univ Pittsburgh, Sch Med, Dept Immunol, Pittsburgh, PA 15213 USA
[4] Univ Pittsburgh, Sch Med, Dept Computat & Syst Biol, Pittsburgh, PA 15260 USA
来源
GENOME MEDICINE | 2013年 / 5卷
基金
美国国家卫生研究院;
关键词
RIBOSOMAL-RNA GENE; CANDIDA-ALBICANS; FUNGAL MICROBIOTA; HUMAN SKIN; IDENTIFICATION; RECOGNITION; COMMUNITIES; GENERATION; SAMPLES; DIVERSE;
D O I
10.1186/gm467
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The mycobiome, referring primarily to the fungal biota in an environment, is an important component of the human microbiome. Despite its importance, it has remained understudied. New culture-independent approaches to determine microbial diversity, such as next-generation sequencing methods, are greatly broadening our view of fungal importance. An integrative analysis of current studies shows that different body sites harbor specific fungal populations, and that diverse mycobiome patterns are associated with various diseases. By interfacing with other biomes, as well as with the host, the mycobiome probably contributes to the progression of fungus-associated diseases and plays an important role in health and disease.
引用
收藏
页数:12
相关论文
共 75 条
[61]   Immunity to fungal infections [J].
Romani, Luigina .
NATURE REVIEWS IMMUNOLOGY, 2011, 11 (04) :275-288
[62]   Dectin-2 Recognition of α-Mannans and Induction of Th17 Cell Differentiation Is Essential for Host Defense against Candida albicans [J].
Saijo, Shinobu ;
Ikeda, Satoshi ;
Yamabe, Keiko ;
Kakuta, Shigeru ;
Ishigame, Harumichi ;
Akitsu, Aoi ;
Fujikado, Noriyuki ;
Kusaka, Toshimasa ;
Kubo, Sachiko ;
Chung, Soo-hyun ;
Komatsu, Ryohei ;
Miura, Noriko ;
Adachi, Yoshiyuki ;
Ohno, Naohito ;
Shibuya, Kazutoshi ;
Yamamoto, Natsuo ;
Kawakami, Kazuyoshi ;
Yamasaki, Sho ;
Saito, Takashi ;
Akira, Shizuo ;
Iwakura, Yoichiro .
IMMUNITY, 2010, 32 (05) :681-691
[63]  
Santos Procopio Miguel dos, 2006, Arq Bras Oftalmol, V69, P915
[64]   Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities [J].
Schloss, Patrick D. ;
Westcott, Sarah L. ;
Ryabin, Thomas ;
Hall, Justine R. ;
Hartmann, Martin ;
Hollister, Emily B. ;
Lesniewski, Ryan A. ;
Oakley, Brian B. ;
Parks, Donovan H. ;
Robinson, Courtney J. ;
Sahl, Jason W. ;
Stres, Blaz ;
Thallinger, Gerhard G. ;
Van Horn, David J. ;
Weber, Carolyn F. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2009, 75 (23) :7537-7541
[65]  
SCHLOSS PD, 2009, MICROBIOME, V75, P7537, DOI DOI 10.1128/AEM.01541-09
[66]  
SCHOCH CL, 2012, GENOME BIOL, V109, P6241, DOI DOI 10.1073/PNAS.1117018109
[67]   Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi [J].
Schoch, Conrad L. ;
Seifert, Keith A. ;
Huhndorf, Sabine ;
Robert, Vincent ;
Spouge, John L. ;
Levesque, C. Andre ;
Chen, Wen ;
Bolchacova, Elena ;
Voigt, Kerstin ;
Crous, Pedro W. ;
Miller, Andrew N. ;
Wingfield, Michael J. ;
Aime, M. Catherine ;
An, Kwang-Deuk ;
Bai, Feng-Yan ;
Barreto, Robert W. ;
Begerow, Dominik ;
Bergeron, Marie-Josee ;
Blackwell, Meredith ;
Boekhout, Teun ;
Bogale, Mesfin ;
Boonyuen, Nattawut ;
Burgaz, Ana R. ;
Buyck, Bart ;
Cai, Lei ;
Cai, Qing ;
Cardinali, G. ;
Chaverri, Priscila ;
Coppins, Brian J. ;
Crespo, Ana ;
Cubas, Paloma ;
Cummings, Craig ;
Damm, Ulrike ;
de Beer, Z. Wilhelm ;
de Hoog, G. Sybren ;
Del-Prado, Ruth ;
Dentinger, B. ;
Dieguez-Uribeondo, J. ;
Divakar, P. K. ;
Douglas, B. ;
Duenas, M. ;
Duong, T. A. ;
Eberhardt, U. ;
Edwards, J. E. ;
Elshahed, M. S. ;
Fliegerova, K. ;
Furtado, M. ;
Garcia, M. A. ;
Ge, Z. W. ;
Griffith, G. W. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (16) :6241-6246
[68]   Abundant and diverse fungal microbiota in the murine intestine [J].
Scupham, AJ ;
Presley, LL ;
Wei, B ;
Bent, E ;
Griffith, N ;
McPherson, M ;
Zhu, FL ;
Oluwadara, O ;
Rao, N ;
Braun, J ;
Borneman, J .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (01) :793-801
[69]  
SCUPHAM AJ, 2006, PLOS ONE, V72, P793, DOI DOI 10.1128/AEM.72.1.793-801.2006
[70]  
Sellart-Altisent Maite, 2007, Revista Iberoamericana de Micologia, V24, P125