共 20 条
Genome-wide prediction of C-elegans genetic interactions
被引:204
作者:

Zhong, WW
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机构: CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA

Sternberg, PW
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机构:
CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA
机构:
[1] CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA
[2] CALTECH, Div Biol, Pasadena, CA 91125 USA
来源:
关键词:
D O I:
10.1126/science.1123287
中图分类号:
O [数理科学和化学];
P [天文学、地球科学];
Q [生物科学];
N [自然科学总论];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
To obtain a global view of functional interactions among genes in a metazoan genome, we computationally integrated interactome data, gene expression data, phenotype data, and functional annotation data from three model organisms-Saccharomyces cerevisiae, Caenorhabditis elegans, and Drosophila melanogaster-and predicted genome-wide genetic interactions in C. elegans. The resulting genetic interaction network (consisting of 18,183 interactions) provides a framework for system-level understanding of gene functions. We experimentally tested the predicted interactions for two human disease-related genes and identified 14 new modifiers.
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页码:1481 / 1484
页数:4
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共 20 条
[1]
Gene Ontology: tool for the unification of biology
[J].
Ashburner, M
;
Ball, CA
;
Blake, JA
;
Botstein, D
;
Butler, H
;
Cherry, JM
;
Davis, AP
;
Dolinski, K
;
Dwight, SS
;
Eppig, JT
;
Harris, MA
;
Hill, DP
;
Issel-Tarver, L
;
Kasarskis, A
;
Lewis, S
;
Matese, JC
;
Richardson, JE
;
Ringwald, M
;
Rubin, GM
;
Sherlock, G
.
NATURE GENETICS,
2000, 25 (01)
:25-29

Ashburner, M
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Ball, CA
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Blake, JA
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Botstein, D
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Butler, H
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Cherry, JM
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Davis, AP
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Dolinski, K
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Dwight, SS
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Eppig, JT
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Harris, MA
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Hill, DP
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Issel-Tarver, L
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Kasarskis, A
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Lewis, S
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Matese, JC
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Richardson, JE
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Ringwald, M
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Rubin, GM
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA

Sherlock, G
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA
[2]
PRODISTIN Web Site:: a tool for the functional classification of proteins from interaction networks
[J].
Baudot, A
;
Martin, D
;
Mouren, P
;
Chevenet, F
;
Guénoche, A
;
Jacq, B
;
Brun, C
.
BIOINFORMATICS,
2006, 22 (02)
:248-250

Baudot, A
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France

Martin, D
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France

Mouren, P
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France

Chevenet, F
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France

Guénoche, A
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France

Jacq, B
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France

Brun, C
论文数: 0 引用数: 0
h-index: 0
机构: CNRS, UMR 6545, LGPD, IBDM, F-13288 Marseille 9, France
[3]
CAENORHABDITIS-ELEGANS RAS GENE LET-60 ACTS AS A SWITCH IN THE PATHWAY OF VULVAR INDUCTION
[J].
BEITEL, GJ
;
CLARK, SG
;
HORVITZ, HR
.
NATURE,
1990, 348 (6301)
:503-509

BEITEL, GJ
论文数: 0 引用数: 0
h-index: 0
机构: Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139

CLARK, SG
论文数: 0 引用数: 0
h-index: 0
机构: Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139

HORVITZ, HR
论文数: 0 引用数: 0
h-index: 0
机构: Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139
[4]
Combined functional genomic maps of the C-elegans DNA damage response
[J].
Boulton, SJ
;
Gartner, A
;
Reboul, J
;
Vaglio, P
;
Dyson, N
;
Hill, DE
;
Vidal, M
.
SCIENCE,
2002, 295 (5552)
:127-131

Boulton, SJ
论文数: 0 引用数: 0
h-index: 0
机构: Dana Farber Canc Inst, Boston, MA 02115 USA

Gartner, A
论文数: 0 引用数: 0
h-index: 0
机构: Dana Farber Canc Inst, Boston, MA 02115 USA

Reboul, J
论文数: 0 引用数: 0
h-index: 0
机构: Dana Farber Canc Inst, Boston, MA 02115 USA

论文数: 引用数:
h-index:
机构:

Dyson, N
论文数: 0 引用数: 0
h-index: 0
机构: Dana Farber Canc Inst, Boston, MA 02115 USA

Hill, DE
论文数: 0 引用数: 0
h-index: 0
机构: Dana Farber Canc Inst, Boston, MA 02115 USA

Vidal, M
论文数: 0 引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Boston, MA 02115 USA Dana Farber Canc Inst, Boston, MA 02115 USA
[5]
Inositol trisphosphate mediates a RAS-independent response to LET-23 receptor tyrosine kinase activation in C-elegans
[J].
Clandinin, TR
;
DeModena, JA
;
Sternberg, PW
.
CELL,
1998, 92 (04)
:523-533

Clandinin, TR
论文数: 0 引用数: 0
h-index: 0
机构: CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA

DeModena, JA
论文数: 0 引用数: 0
h-index: 0
机构: CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA

Sternberg, PW
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA
[6]
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
[J].
Gunsalus, KC
;
Ge, H
;
Schetter, AJ
;
Goldberg, DS
;
Han, JDJ
;
Hao, T
;
Berriz, GF
;
Bertin, N
;
Huang, J
;
Chuang, LS
;
Li, N
;
Mani, R
;
Hyman, AA
;
Sönnichsen, B
;
Echeverri, CJ
;
Roth, FP
;
Vidal, M
;
Piano, F
.
NATURE,
2005, 436 (7052)
:861-865

Gunsalus, KC
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Ge, H
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Schetter, AJ
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Goldberg, DS
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Han, JDJ
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Hao, T
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Berriz, GF
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Bertin, N
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Huang, J
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Chuang, LS
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Li, N
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Mani, R
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Hyman, AA
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Sönnichsen, B
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Echeverri, CJ
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Roth, FP
论文数: 0 引用数: 0
h-index: 0
机构:
NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Vidal, M
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA

Piano, F
论文数: 0 引用数: 0
h-index: 0
机构: NYU, Dept Biol, Ctr Comparat Funct Genom, New York, NY 10003 USA
[7]
GENES THAT CONTROL A TEMPERATURE-COMPENSATED ULTRADIAN CLOCK IN CAENORHABDITIS-ELEGANS
[J].
IWASAKI, K
;
LIU, DWC
;
THOMAS, JH
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1995, 92 (22)
:10317-10321

IWASAKI, K
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV WASHINGTON,DEPT GENET,SEATTLE,WA 98195 UNIV WASHINGTON,DEPT GENET,SEATTLE,WA 98195

LIU, DWC
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV WASHINGTON,DEPT GENET,SEATTLE,WA 98195 UNIV WASHINGTON,DEPT GENET,SEATTLE,WA 98195

THOMAS, JH
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV WASHINGTON,DEPT GENET,SEATTLE,WA 98195 UNIV WASHINGTON,DEPT GENET,SEATTLE,WA 98195
[8]
A Bayesian networks approach for predicting protein-protein interactions from genomic data
[J].
Jansen, R
;
Yu, HY
;
Greenbaum, D
;
Kluger, Y
;
Krogan, NJ
;
Chung, SB
;
Emili, A
;
Snyder, M
;
Greenblatt, JF
;
Gerstein, M
.
SCIENCE,
2003, 302 (5644)
:449-453

Jansen, R
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Yu, HY
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Greenbaum, D
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Kluger, Y
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Krogan, NJ
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Chung, SB
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Emili, A
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Snyder, M
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Greenblatt, JF
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA

Gerstein, M
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA
[9]
A probabilistic functional network of yeast genes
[J].
Lee, I
;
Date, SV
;
Adai, AT
;
Marcotte, EM
.
SCIENCE,
2004, 306 (5701)
:1555-1558

Lee, I
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Ctr Syst & Synthet Biol, Austin, TX 78712 USA

Date, SV
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Ctr Syst & Synthet Biol, Austin, TX 78712 USA

Adai, AT
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Ctr Syst & Synthet Biol, Austin, TX 78712 USA

Marcotte, EM
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas, Ctr Syst & Synthet Biol, Austin, TX 78712 USA Univ Texas, Ctr Syst & Synthet Biol, Austin, TX 78712 USA
[10]
Opposing functions of calcineurin and CaMKII regulate G-protein signaling in egg-laying behavior of C-elegans
[J].
Lee, J
;
Jee, C
;
Song, HO
;
Bandyopadhyay, J
;
Lee, JI
;
Yu, JR
;
Lee, J
;
Park, BJ
;
Ahnn, J
.
JOURNAL OF MOLECULAR BIOLOGY,
2004, 344 (02)
:585-595

Lee, J
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Jee, C
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Song, HO
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Bandyopadhyay, J
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Lee, JI
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Yu, JR
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Lee, J
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Park, BJ
论文数: 0 引用数: 0
h-index: 0
机构: Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea

Ahnn, J
论文数: 0 引用数: 0
h-index: 0
机构:
Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea Gwangju Inst Sci & Technol, Dept Life Sci, Kwangju 500712, South Korea