Promoter proximal pausing on genes in metazoans

被引:79
作者
Gilmour, David S. [1 ]
机构
[1] Penn State Univ, Dept Biochem & Mol Biol, Ctr Gene Regulat, University Pk, PA 16802 USA
关键词
RNA-POLYMERASE-II; TRANSCRIPTIONAL ACTIVATION DOMAINS; NEGATIVE ELONGATION-FACTOR; HEPATITIS-DELTA ANTIGEN; CLEAVAGE FACTOR TFIIS; HEAT-SHOCK; IN-VIVO; P-TEFB; HSP70; PROMOTER; GAGA FACTOR;
D O I
10.1007/s00412-008-0182-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The past two decades of research into transcriptional control of protein-encoding genes in eukaryotes have focused on regulatory mechanisms that act by controlling the recruitment of Pol II to a gene's promoter. Recent genome-wide analyses of the distribution of Pol II indicates that Pol II is concentrated in the promoter regions of thousands of genes in human and Drosophila cells. In many cases, Pol II may have initiated transcription but paused in the promoter proximal region. Hence, release of Pol II from the promoter region into the body of a gene is now recognized as a common rate-limiting step in the control of gene expression. Notably, most genes with paused Pol II are expressed indicating that the pause can be transient. What causes Pol II to concentrate in the promoter region and how it is released to transcribe a gene are the focus of this review.
引用
收藏
页码:1 / 10
页数:10
相关论文
共 95 条
[11]   Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock [J].
Boehm, AK ;
Saunders, A ;
Werner, J ;
Lis, JT .
MOLECULAR AND CELLULAR BIOLOGY, 2003, 23 (21) :7628-7637
[12]   Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II [J].
Bondarenko, Vladimir A. ;
Steele, Louise M. ;
Ujvari, Andrea ;
Gaykalova, Daria A. ;
Kulaeva, Olga I. ;
Polikanov, Yury S. ;
Luse, Donal S. ;
Studitsky, Vasily M. .
MOLECULAR CELL, 2006, 24 (03) :469-479
[13]   Disruption of downstream chromatin directed by a transcriptional activator [J].
Brown, SA ;
Kingston, RE .
GENES & DEVELOPMENT, 1997, 11 (23) :3116-3121
[14]   Transcriptional activation domains stimulate initiation and elongation at different times and via different residues [J].
Brown, SA ;
Weirich, CS ;
Newton, EM ;
Kingston, RE .
EMBO JOURNAL, 1998, 17 (11) :3146-3154
[15]   Activator-dependent regulation of transcriptional pausing on nucleosomal templates [J].
Brown, SA ;
Imbalzano, AN ;
Kingston, RE .
GENES & DEVELOPMENT, 1996, 10 (12) :1479-1490
[16]   The CTD code [J].
Buratowski, S .
NATURE STRUCTURAL BIOLOGY, 2003, 10 (09) :679-680
[17]   RNA polymerase II-mediated transcription at active loci does not require histone H3S10 phosphorylation in Drosophila [J].
Cai, Weili ;
Bao, Xiaomin ;
Deng, Huai ;
Jin, Ye ;
Girton, Jack ;
Johansen, Jorgen ;
Johansen, Kristen M. .
DEVELOPMENT, 2008, 135 (17) :2917-2925
[18]   Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo [J].
Chao, SH ;
Price, DH .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (34) :31793-31799
[19]   Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation [J].
Cheng, Bo ;
Price, David H. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (30) :21901-21912
[20]   Transcriptional activation by GAGA factor is through its direct interaction with dmTAF3 [J].
Chopra, Vivek Sarojkumar ;
Srinivasan, Arumugam ;
Kumar, Ram Parikshan ;
Mishra, Krishnaveni ;
Basquin, Denis ;
Docquier, Mylene ;
Seum, Carole ;
Pauli, Daniel ;
Mishra, Rakesh Kumar .
DEVELOPMENTAL BIOLOGY, 2008, 317 (02) :660-670