miR2Disease: a manually curated database for microRNA deregulation in human disease

被引:1112
作者
Jiang, Qinghua [1 ]
Wang, Yadong [1 ,2 ]
Hao, Yangyang [1 ]
Juan, Liran [1 ]
Teng, Mingxiang [1 ]
Zhang, Xinjun [1 ]
Li, Meimei [1 ]
Wang, Guohua [1 ,2 ,3 ]
Liu, Yunlong [2 ,3 ,4 ]
机构
[1] Harbin Inst Technol, Sch Comp Sci & Technol, Ctr Biomed Informat, Harbin 150001, Heilongjiang, Peoples R China
[2] Indiana Univ, Sch Med, Ctr Computat Biol & Bioinformat, Indianapolis, IN 46202 USA
[3] Indiana Univ, Sch Med, Dept Med, Div Biostat, Indianapolis, IN 46202 USA
[4] Indiana Univ, Sch Med, Ctr Med Genom, Indianapolis, IN 46202 USA
基金
中国国家自然科学基金;
关键词
LUNG-CANCER; REGULATED MICRORNA; DOWN-REGULATION; TUMOR INVASION; BREAST-CANCER; EXPRESSION; MIRNAS; GENE; TARGETS; METASTASIS;
D O I
10.1093/nar/gkn714
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
'miR2Disease', a manually curated database, aims at providing a comprehensive resource of microRNA deregulation in various human diseases. The current version of miR2Disease documents 1939 curated relationships between 299 human microRNAs and 94 human diseases by reviewing more than 600 published papers. Around one-seventh of the microRNA-disease relationships represent the pathogenic roles of deregulated microRNA in human disease. Each entry in the miR2Disease contains detailed information on a microRNA disease relationship, including a microRNA ID, the disease name, a brief description of the microRNA-disease relationship, an expression pattern of the microRNA, the detection method for microRNA expression, experimentally verified target gene(s) of the microRNA and a literature reference. miR2Disease provides a user-friendly interface for a convenient retrieval of each entry by microRNA ID, disease name, or target gene. In addition, miR2Disease offers a submission page that allows researchers to submit established microRNA disease relationships that are not documented. Once approved by the submission review committee, the submitted records will be included in the database. miR2Disease is freely available at http://www.miR2Disease.org.
引用
收藏
页码:D98 / D104
页数:7
相关论文
共 53 条
[1]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[2]   The microRNA.org resource: targets and expression [J].
Betel, Doron ;
Wilson, Manda ;
Gabow, Aaron ;
Marks, Debora S. ;
Sander, Chris .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D149-D153
[3]   MiRNAs in cancer: approaches, aetiology, diagnostics and therapy [J].
Blenkiron, Cherie ;
Miska, Eric A. .
HUMAN MOLECULAR GENETICS, 2007, 16 :R106-R113
[4]   The Unified Medical Language System (UMLS): integrating biomedical terminology [J].
Bodenreider, O .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D267-D270
[5]   bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila [J].
Brennecke, J ;
Hipfner, DR ;
Stark, A ;
Russell, RB ;
Cohen, SM .
CELL, 2003, 113 (01) :25-36
[6]   The human let-7a-3 locus contains an epigenetically regulated microRNA gene with oncogenic function [J].
Brueckner, Bodo ;
Stresemann, Carlo ;
Kuner, Ruprecht ;
Mund, Cora ;
Musch, Tanja ;
Meister, Michael ;
Sueltmann, Holger ;
Lyko, Frank .
CANCER RESEARCH, 2007, 67 (04) :1419-1423
[7]   Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia [J].
Calin, GA ;
Dumitru, CD ;
Shimizu, M ;
Bichi, R ;
Zupo, S ;
Noch, E ;
Aldler, H ;
Rattan, S ;
Keating, M ;
Rai, K ;
Rassenti, L ;
Kipps, T ;
Negrini, M ;
Bullrich, F ;
Croce, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (24) :15524-15529
[8]   Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers [J].
Calin, GA ;
Sevignani, C ;
Dan Dumitru, C ;
Hyslop, T ;
Noch, E ;
Yendamuri, S ;
Shimizu, M ;
Rattan, S ;
Bullrich, F ;
Negrini, M ;
Croce, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (09) :2999-3004
[9]   MicroRNA signatures in human cancers [J].
Calin, George A. ;
Croce, Carlo M. .
NATURE REVIEWS CANCER, 2006, 6 (11) :857-866
[10]   MicroRNA-cancer connection: The beginning of a new tale [J].
Calin, George Adrian ;
Croce, Carlo Maria .
CANCER RESEARCH, 2006, 66 (15) :7390-7394