Computational comparisons of model genomes

被引：25

作者：

Ouzounis, C

Casari, G

Sander, C

Tamames, J

Valencia, A

机构：

[1] CSIC,CTR NACL BIOTECNOL,PROT DESIGN GRP,E-28049 MADRID,SPAIN

[2] EUROPEAN MOL BIOL LAB,D-69012 HEIDELBERG,GERMANY

[3] EUROPEAN BIOINFORMAT INST,EMBL,CAMBRIDGE CB10 1RQ,ENGLAND

来源：

TRENDS IN BIOTECHNOLOGY | 1996年 / 14卷 / 08期

关键词：

D O I：

10.1016/0167-7799(96)10043-3

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Complete genomes from model organisms provide new challenges for computational molecular biology. Novel questions emerge from the genome data obtained from the functional prediction of thousands of gene products. In this review, we present some approaches to the computational comparison of genomes, based on sequence and text analysis, and comparisons of genome composition and gene order.

引用

页码：280 / 285

页数：6

共 23 条

[1] 3,400 NEW EXPRESSED SEQUENCE TAGS IDENTIFY DIVERSITY OF TRANSCRIPTS IN HUMAN BRAIN
ADAMS, MD
KERLAVAGE, AR
FIELDS, C
VENTER, JC
[J]. NATURE GENETICS, 1993, 4 (03) : 256 - 267
[2] EXPLORING THE MYCOPLASMA-CAPRICOLUM GENOME - A MINIMAL CELL REVEALS ITS PHYSIOLOGY
BORK, P
OUZOUNIS, C
CASARI, G
SCHNEIDER, R
SANDER, C
DOLAN, M
GILBERT, W
GILLEVET, PM
[J]. MOLECULAR MICROBIOLOGY, 1995, 16 (05) : 955 - 967
[3] CONSERVED GENE CLUSTERS IN THE HIGHLY REARRANGED CHLOROPLAST GENOMES OF CHLAMYDOMONAS-MOEWUSII AND CHLAMYDOMONAS-REINHARDTII
BOUDREAU, E
OTIS, C
TURMEL, M
[J]. PLANT MOLECULAR BIOLOGY, 1994, 24 (04) : 585 - 602
[4] CHALLENGING TIMES FOR BIOINFORMATICS
CASARI, G
ANDRADE, MA
BORK, P
BOYLE, J
DARUVAR, A
OUZOUNIS, C
SCHNEIDER, R
TAMAMES, J
VALENCIA, A
SANDER, C
[J]. NATURE, 1995, 376 (6542) : 647 - 648
[5] CASARI G, 1996, 1 ANN PAC S BIOC WOR, P707
[6] DISTINGUISHING HOMOLOGOUS FROM ANALOGOUS PROTEINS
FITCH, WM
[J]. SYSTEMATIC ZOOLOGY, 1970, 19 (02): : 99 - &
[7] WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD
FLEISCHMANN, RD
ADAMS, MD
WHITE, O
CLAYTON, RA
KIRKNESS, EF
KERLAVAGE, AR
BULT, CJ
TOMB, JF
DOUGHERTY, BA
MERRICK, JM
MCKENNEY, K
SUTTON, G
FITZHUGH, W
FIELDS, C
GOCAYNE, JD
SCOTT, J
SHIRLEY, R
LIU, LI
GLODEK, A
KELLEY, JM
WEIDMAN, JF
PHILLIPS, CA
SPRIGGS, T
HEDBLOM, E
COTTON, MD
UTTERBACK, TR
HANNA, MC
NGUYEN, DT
SAUDEK, DM
BRANDON, RC
FINE, LD
FRITCHMAN, JL
FUHRMANN, JL
GEOGHAGEN, NSM
GNEHM, CL
MCDONALD, LA
SMALL, KV
FRASER, CM
SMITH, HO
VENTER, JC
[J]. SCIENCE, 1995, 269 (5223) : 496 - 512
[8] THE MINIMAL GENE COMPLEMENT OF MYCOPLASMA-GENITALIUM
FRASER, CM
GOCAYNE, JD
WHITE, O
ADAMS, MD
CLAYTON, RA
FLEISCHMANN, RD
BULT, CJ
KERLAVAGE, AR
SUTTON, G
KELLEY, JM
FRITCHMAN, JL
WEIDMAN, JF
SMALL, KV
SANDUSKY, M
FUHRMANN, J
NGUYEN, D
UTTERBACK, TR
SAUDEK, DM
PHILLIPS, CA
MERRICK, JM
TOMB, JF
DOUGHERTY, BA
BOTT, KF
HU, PC
LUCIER, TS
PETERSON, SN
SMITH, HO
HUTCHISON, CA
VENTER, JC
[J]. SCIENCE, 1995, 270 (5235) : 397 - 403
[9] COMPARISONS OF EUKARYOTIC GENOMIC SEQUENCES
KARLIN, S
LADUNGA, I
[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (26) : 12832 - 12836
[10] KARP PD, 1996, INTELIIGENT SYSTEMS, P116

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