Small-Angle X-Ray Scattering on Biological Macromolecules and Nanocomposites in Solution

被引:151
作者
Blanchet, Clement E. [1 ]
Svergun, Dmitri I. [1 ]
机构
[1] European Mol Biol Lab EMBL Hamburg, D-22603 Hamburg, Germany
来源
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64 | 2013年 / 64卷
关键词
macromolecular structure; ab initio methods; rigid-body modeling; flexible macromolecules; nanostructure; synchrotrons; LOW-RESOLUTION STRUCTURE; STRUCTURAL-CHARACTERIZATION; SHAPE DETERMINATION; WEB SERVER; PROTEINS; SAXS; CONFORMATION; COMPUTATION; DOMAIN; RECONSTRUCTION;
D O I
10.1146/annurev-physchem-040412-110132
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Small-angle X-ray scattering (SAXS) is a powerful method to study the structural properties of materials at the nanoscale. Recent progress in instrumentation and analysis methods has led to rapidly growing applications of this technique for the characterization of biological macromolecules in solution. Ab initio and rigid-body modeling methods allow one to build three-dimensional, low-resolution models from SAXS data. With the new approaches, oligomeric states of proteins and macromolecular complexes can be assessed, chemical equilibria and kinetic reactions can be studied, and even flexible objects such as intrinsically unfolded proteins can be quantitatively characterized. This review describes the analysis methods of SAXS data from macromolecular solutions, ranging from the computation of overall structural parameters to advanced three-dimensional modeling. The efficiency of these methods is illustrated by recent applications to biological macromolecules and nanocomposite particles.
引用
收藏
页码:37 / 54
页数:18
相关论文
共 86 条
[1]  
[Anonymous], 1987, Structure Analysis by Small-Angle X-Ray and Neutron Scattering
[2]  
[Anonymous], 1982, Small angle x-ray scattering, DOI DOI 10.1002/ACTP.1985.010360520
[3]   Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein [J].
Bada, M ;
Walther, D ;
Arcangioli, B ;
Doniach, S ;
Delarue, M .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 300 (03) :563-574
[4]   SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules [J].
Bardhan, Jaydeep ;
Park, Sanghyun ;
Makowski, Lee .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2009, 42 :932-943
[5]   Structural characterization of flexible proteins using small-angle X-ray scattering [J].
Bernado, Pau ;
Mylonas, Efstratios ;
Petoukhov, Maxim V. ;
Blackledge, Martin ;
Svergun, Dmitri I. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (17) :5656-5664
[6]   Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering [J].
Bernado, Pau ;
Svergun, Dmitri I. .
MOLECULAR BIOSYSTEMS, 2012, 8 (01) :151-167
[7]   Effect of interdomain dynamics on the structure determination of modular proteins by small-angle scattering [J].
Bernado, Pau .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2010, 39 (05) :769-780
[8]   Structural characterization of unphosphorylated STAT5a oligomerization equilibrium in solution by small-angle X-ray scattering [J].
Bernado, Pau ;
Perez, Yolanda ;
Blobel, Jascha ;
Fernandez-Recio, Juan ;
Svergun, Dmitri I. ;
Pons, Miquel .
PROTEIN SCIENCE, 2009, 18 (04) :716-726
[9]   Instrumental setup for high-throughput small- and wide-angle solution scattering at the X33 beamline of EMBL Hamburg [J].
Blanchet, Clement E. ;
Zozulya, Alexey V. ;
Kikhney, Alexey G. ;
Franke, Daniel ;
Konarev, Peter V. ;
Shang, Weifeng ;
Klaering, Robbert ;
Robrahn, Bernd ;
Hermes, Christoph ;
Cipriani, Florent ;
Svergun, Dmitri I. ;
Roessle, Manfred .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2012, 45 :489-495
[10]  
Blundell TL., 1976, PROTEIN CRYSTALLOGRA