Small-Angle X-Ray Scattering on Biological Macromolecules and Nanocomposites in Solution

被引:151
作者
Blanchet, Clement E. [1 ]
Svergun, Dmitri I. [1 ]
机构
[1] European Mol Biol Lab EMBL Hamburg, D-22603 Hamburg, Germany
来源
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64 | 2013年 / 64卷
关键词
macromolecular structure; ab initio methods; rigid-body modeling; flexible macromolecules; nanostructure; synchrotrons; LOW-RESOLUTION STRUCTURE; STRUCTURAL-CHARACTERIZATION; SHAPE DETERMINATION; WEB SERVER; PROTEINS; SAXS; CONFORMATION; COMPUTATION; DOMAIN; RECONSTRUCTION;
D O I
10.1146/annurev-physchem-040412-110132
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Small-angle X-ray scattering (SAXS) is a powerful method to study the structural properties of materials at the nanoscale. Recent progress in instrumentation and analysis methods has led to rapidly growing applications of this technique for the characterization of biological macromolecules in solution. Ab initio and rigid-body modeling methods allow one to build three-dimensional, low-resolution models from SAXS data. With the new approaches, oligomeric states of proteins and macromolecular complexes can be assessed, chemical equilibria and kinetic reactions can be studied, and even flexible objects such as intrinsically unfolded proteins can be quantitatively characterized. This review describes the analysis methods of SAXS data from macromolecular solutions, ranging from the computation of overall structural parameters to advanced three-dimensional modeling. The efficiency of these methods is illustrated by recent applications to biological macromolecules and nanocomposite particles.
引用
收藏
页码:37 / 54
页数:18
相关论文
共 86 条
[21]   Changes in biomolecular conformation seen by small angle X-ray scattering [J].
Doniach, S .
CHEMICAL REVIEWS, 2001, 101 (06) :1763-1778
[22]   The Hofmeister effect as seen by SAXS in protein solutions [J].
Finet, S ;
Skouri-Panet, F ;
Casselyn, M ;
Bonneté, F ;
Tardieu, A .
CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2004, 9 (1-2) :112-116
[23]   Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale [J].
Fischer, H. ;
de Oliveira Neto, M. ;
Napolitano, H. B. ;
Polikarpov, I. ;
Craievich, A. F. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2010, 43 :101-109
[24]   Automated acquisition and analysis of small angle X-ray scattering data [J].
Franke, Daniel ;
Kikhney, Alexey G. ;
Svergun, Dmitri I. .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 2012, 689 :52-59
[25]  
FRASER RDB, 1978, J APPL CRYSTALLOGR, V11, P693, DOI 10.1107/S0021889878014296
[26]   A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints [J].
Gabel, F. ;
Simon, B. ;
Nilges, M. ;
Petoukhov, M. ;
Svergun, D. ;
Sattler, M. .
JOURNAL OF BIOMOLECULAR NMR, 2008, 41 (04) :199-208
[27]   Low-resolution structure of a vesicle disrupting α-synuclein oligomer that accumulates during fibrillation [J].
Giehm, Lise ;
Svergun, Dmitri I. ;
Otzen, Daniel E. ;
Vestergaard, Bente .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (08) :3246-3251
[28]   NEW METHOD FOR EVALUATION OF SMALL-ANGLE SCATTERING DATA [J].
GLATTER, O .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1977, 10 (OCT1) :415-421
[29]   SINGULAR VALUE DECOMPOSITION AND LEAST SQUARES SOLUTIONS [J].
GOLUB, GH ;
REINSCH, C .
NUMERISCHE MATHEMATIK, 1970, 14 (05) :403-&
[30]   Improved Fitting of Solution X-ray Scattering Data to Macromolecular Structures and Structural Ensembles by Explicit Water Modeling [J].
Grishaev, Alexander ;
Guo, Liang ;
Irving, Thomas ;
Bax, Ad .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (44) :15484-15486