Small-Angle X-Ray Scattering on Biological Macromolecules and Nanocomposites in Solution

被引:151
作者
Blanchet, Clement E. [1 ]
Svergun, Dmitri I. [1 ]
机构
[1] European Mol Biol Lab EMBL Hamburg, D-22603 Hamburg, Germany
来源
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64 | 2013年 / 64卷
关键词
macromolecular structure; ab initio methods; rigid-body modeling; flexible macromolecules; nanostructure; synchrotrons; LOW-RESOLUTION STRUCTURE; STRUCTURAL-CHARACTERIZATION; SHAPE DETERMINATION; WEB SERVER; PROTEINS; SAXS; CONFORMATION; COMPUTATION; DOMAIN; RECONSTRUCTION;
D O I
10.1146/annurev-physchem-040412-110132
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Small-angle X-ray scattering (SAXS) is a powerful method to study the structural properties of materials at the nanoscale. Recent progress in instrumentation and analysis methods has led to rapidly growing applications of this technique for the characterization of biological macromolecules in solution. Ab initio and rigid-body modeling methods allow one to build three-dimensional, low-resolution models from SAXS data. With the new approaches, oligomeric states of proteins and macromolecular complexes can be assessed, chemical equilibria and kinetic reactions can be studied, and even flexible objects such as intrinsically unfolded proteins can be quantitatively characterized. This review describes the analysis methods of SAXS data from macromolecular solutions, ranging from the computation of overall structural parameters to advanced three-dimensional modeling. The efficiency of these methods is illustrated by recent applications to biological macromolecules and nanocomposite particles.
引用
收藏
页码:37 / 54
页数:18
相关论文
共 86 条
[61]   SAXS Ensemble Refinement of ESCRT-III CHMP3 Conformational Transitions [J].
Rozycki, Bartosz ;
Kim, Young C. ;
Hummer, Gerhard .
STRUCTURE, 2011, 19 (01) :109-116
[62]   FoXS: a web server for rapid computation and fitting of SAXS profiles [J].
Schneidman-Duhovny, Dina ;
Hammel, Michal ;
Sali, Andrej .
NUCLEIC ACIDS RESEARCH, 2010, 38 :W540-W544
[63]   Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 2: Behavior in Solution [J].
Shtykova, Eleonora V. ;
Malyutin, Andrey ;
Dyke, Jason ;
Stein, Barry ;
Konarev, Peter V. ;
Dragnea, Bogdan ;
Svergun, Dmitri I. ;
Bronstein, Lyudmila M. .
JOURNAL OF PHYSICAL CHEMISTRY C, 2010, 114 (50) :21908-21913
[64]   Unusual Structural Morphology of Dendrimer/CdS Nanocomposites Revealed by Synchrotron X-ray Scattering [J].
Shtykoya, Eleonora V. ;
Kuchkina, Nina V. ;
Shifrina, Zinaida B. ;
Bronstein, Lyudmila M. ;
Svergun, Dmitri I. .
JOURNAL OF PHYSICAL CHEMISTRY C, 2012, 116 (14) :8069-8078
[66]   NEW METHOD FOR DETERMINATION OF SURFACE FORM AND INTERNAL STRUCTURE OF DISSOLVED GLOBULAR PROTEINS FROM SNALL ANGLE X-RAY MEASUREMENTS [J].
STUHRMANN, HB .
ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-FRANKFURT, 1970, 72 (4-6) :177-+
[67]   NEUTRON SMALL-ANGLE SCATTERING OF BIOLOGICAL MACROMOLECULES IN SOLUTION [J].
STUHRMANN, HB .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1974, 7 (APR1) :173-178
[68]   CRYSOL - A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates [J].
Svergun, D ;
Barberato, C ;
Koch, MHJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1995, 28 :768-773
[69]   Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing [J].
Svergun, DI .
BIOPHYSICAL JOURNAL, 1999, 76 (06) :2879-2886
[70]   A map of protein-rRNA distribution in the 70 S Escherichia coli ribosome [J].
Svergun, DI ;
Nierhaus, KH .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (19) :14432-14439