Helices and other secondary structures of β- and γ-peptides

被引:294
作者
Seebach, D
Hook, DF
Glättli, A
机构
[1] ETH, Organ Chem Lab, CH-8093 Zurich, Switzerland
[2] ETH, Phys Chem Lab, CH-8093 Zurich, Switzerland
关键词
beta-amino acid; conformational analysis; GROMOS simulation package; hairpin turn; helix; molecular dynamics simulation; NMR; beta-peptide; gamma-peptide; secondary structure; torsion angle;
D O I
10.1002/bip.20391
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The principal secondary structural motifs adopted by peptides assembled from beta-amino acid units are discussed: the 14-, 12, 10, 12/10-, and 8-helices, as well as the hairpin turn, extended structures, stacks, and sheets. Features that promote a particular folding propensity are outlined and illustrated by structures determined in solution (NMR) and in the solid-state (x-ray). The N-CbetaCalpha-CO dihedral angles from molecular dynamics simulations, which are indicative of a particular secondary structure, are presented. A brief description of a helix and a turn of gamma-peptides is also given. (C) 2005 Wiley Periodicals, Inc.
引用
收藏
页码:23 / 37
页数:15
相关论文
共 159 条
[71]   γ-peptides forming more stable secondary structures than α-peptides:: Synthesis and helical NMR-solution structure of the γ-hexapeptide analog of H-(Val-Ala-Leu)2-OH [J].
Hintermann, T ;
Gademann, K ;
Jaun, B ;
Seebach, D .
HELVETICA CHIMICA ACTA, 1998, 81 (05) :983-1002
[72]   Synthesis of a beta-hexapeptide from (R)-2-aminomethyl-alkanoic acids and structural investigations [J].
Hintermann, T ;
Seebach, D .
SYNLETT, 1997, (05) :437-&
[73]   The proteolytic stability of 'designed' β-peptides containing α-peptide-bond mimics and of mixed α,β-peptides:: Application to the construction of MHC-binding peptides [J].
Hook, DF ;
Bindschädler, P ;
Mahajan, YR ;
Sebesta, R ;
Kast, P ;
Seebach, D .
CHEMISTRY & BIODIVERSITY, 2005, 2 (05) :591-632
[74]   Non-hydrogen-bonded secondary structure in β-peptides:: Evidence from circular dichroism of (S)-pyrrolidine-3-carboxylic acid oligomers and (S)-nipecotic acid oligomers [J].
Huck, BR ;
Langenhan, JM ;
Gellman, SH .
ORGANIC LETTERS, 1999, 1 (11) :1717-1720
[75]  
Jacobi A, 1999, HELV CHIM ACTA, V82, P1150, DOI 10.1002/(SICI)1522-2675(19990804)82:8<1150::AID-HLCA1150>3.0.CO
[76]  
2-O
[77]   DESCRIPTION OF STERIC RELATIONSHIPS ACROSS SINGLE BONDS [J].
KLYNE, W ;
PRELOG, V .
EXPERIENTIA, 1960, 16 (12) :521-523
[78]   Antiparallel sheet formation in beta-peptide foldamers: Effects of beta-amino acid substitution on conformational preference [J].
Krauthauser, S ;
Christianson, LA ;
Powell, DR ;
Gellman, SH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (48) :11719-11720
[79]   Solution structure of a β-peptide ligand for hDM2 [J].
Kritzer, JA ;
Hodsdon, ME ;
Schepartz, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (12) :4118-4119
[80]   Relationship between side chain structure and 14-helix stability of β3-peptides in water [J].
Kritzer, JA ;
Tirado-Rives, J ;
Hart, SA ;
Lear, JD ;
Jorgensen, WL ;
Schepartz, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (01) :167-178