The Sol Genomics Network (SGN)-from genotype to phenotype to breeding

被引：531

作者：

Fernandez-Pozo, Noe ^{[1
]}

Menda, Naama ^{[1
]}

Edwards, Jeremy D. ^{[2
]}

Saha, Surya ^{[1
,3
]}

Tecle, Isaak Y. ^{[1
]}

Strickler, Susan R. ^{[1
]}

Bombarely, Aureliano ^{[4
]}

Fisher-York, Thomas ^{[1
]}

Pujar, Anuradha ^{[1
]}

Foerster, Hartmut ^{[1
]}

Yan, Aimin ^{[1
]}

Mueller, Lukas A. ^{[1
,5
]}

机构：

[1] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA

[2] Dale Bumpers Natl Rice Res Ctr, Stuttgart, AR 72160 USA

[3] Cornell Univ, Dept Plant Pathol & Plant Microbe Biol, Ithaca, NY 14853 USA

[4] Virginia Polytech Inst & State Univ, Dept Hort, Blacksburg, VA 24061 USA

[5] Cornell Univ, Dept Plant Breeding, Ithaca, NY 14853 USA

来源：

NUCLEIC ACIDS RESEARCH | 2015年 / 43卷 / D1期

基金：

美国国家科学基金会; 美国农业部;

关键词：

PROVIDES INSIGHTS; SEQUENCE; COLLECTION; EVOLUTION; DATABASE; LINKING;

D O I：

10.1093/nar/gku1195

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

The Sol Genomics Network (SGN, ext-link-type="uri" xlink:href="http://solgenomics.net" xlink:type="simple">http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tobacco and Nicotiana benthamiana. The database also stores loci and phenotype data, which researchers can upload and edit with user-friendly web interfaces. Tools such as BLAST, GBrowse and JBrowse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools are available. A new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool. With the growing genomic and phenotypic data in the database, SGN is now advancing to develop new web-based breeding tools and implement the code and database structure for other species or clade-specific databases.

引用

页码：D1036 / D1041

页数：6

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