Phytozome: a comparative platform for green plant genomics

被引：3592

作者：

Goodstein, David M. ^{[1
]}

Shu, Shengqiang ^{[1
]}

Howson, Russell ^{[2
]}

Neupane, Rochak ^{[2
]}

Hayes, Richard D. ^{[1
]}

Fazo, Joni ^{[1
]}

Mitros, Therese ^{[2
]}

Dirks, William ^{[2
]}

Hellsten, Uffe ^{[1
]}

Putnam, Nicholas ^{[1
]}

Rokhsar, Daniel S. ^{[1
,2
]}

机构：

[1] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

[2] Univ Calif Berkeley, Ctr Integrat Genom, Berkeley, CA 94720 USA

来源：

NUCLEIC ACIDS RESEARCH | 2012年 / 40卷 / D1期

关键词：

MULTIPLE SEQUENCE ALIGNMENT; INFORMATION RESOURCE; GENE; EVOLUTION; IDENTIFICATION; DATABASE; COMPLEXITY; REVEALS;

D O I：

10.1093/nar/gkr944

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The number of sequenced plant genomes and associated genomic resources is growing rapidly with the advent of both an increased focus on plant genomics from funding agencies, and the application of inexpensive next generation sequencing. To interact with this increasing body of data, we have developed Phytozome (http://www.phytozome.net), a comparative hub for plant genome and gene family data and analysis. Phytozome provides a view of the evolutionary history of every plant gene at the level of sequence, gene structure, gene family and genome organization, while at the same time providing access to the sequences and functional annotations of a growing number (currently 25) of complete plant genomes, including all the land plants and selected algae sequenced at the Joint Genome Institute, as well as selected species sequenced elsewhere. Through a comprehensive plant genome database and web portal, these data and analyses are available to the broader plant science research community, providing powerful comparative genomics tools that help to link model systems with other plants of economic and ecological importance.

引用

页码：D1178 / D1186

页数：9

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