Morphological characterization of molecular complexes present in the synaptic cleft

被引:77
作者
Lucic, V [1 ]
Yang, T [1 ]
Schweikert, G [1 ]
Förster, F [1 ]
Baumeister, W [1 ]
机构
[1] Max Planck Inst Biochem, D-82152 Martinsried, Germany
关键词
D O I
10.1016/j.str.2005.02.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We obtained tomograms of isolated mammalian excitatory synapses by cryo-electron tomography. This method allows the investigation of biological material in the frozen-hydrated state, without staining, and can therefore provide reliable structural information at the molecular level. We developed an automated procedure for the segmentation of molecular complexes present in the synaptic cleft based on thresholding and connectivity, and calculated several morphological characteristics of these complexes. Extensive lateral connections along the synaptic cleft are shown to form a highly connected structure with a complex topology. Our results are essentially parameter-free, i.e., they do not depend on the choice of certain parameter values (such as threshold). In addition, the results are not sensitive to noise; the same conclusions can be drawn from the analysis of both nondenoised and denoised tomograms.
引用
收藏
页码:423 / 434
页数:12
相关论文
共 32 条
[1]   Knowing a nascent synapse when you see it [J].
Ahmari, SE ;
Smith, SJ .
NEURON, 2002, 34 (03) :333-336
[2]   Cryo-electron microscopy of vitreous sections of native biological cells and tissues [J].
Al-Amoudi, A ;
Norlen, LPO ;
Dubochet, J .
JOURNAL OF STRUCTURAL BIOLOGY, 2004, 148 (01) :131-135
[3]   BIOCHEMICAL-CHARACTERIZATION AND LOCALIZATION OF A NON-NORMAL-METHYL-D-ASPARTATE GLUTAMATE RECEPTOR IN RAT-BRAIN [J].
BLACKSTONE, CD ;
MOSS, SJ ;
MARTIN, LJ ;
LEVEY, AI ;
PRICE, DL ;
HUGANIR, RL .
JOURNAL OF NEUROCHEMISTRY, 1992, 58 (03) :1118-1126
[4]  
CAMILLI PD, 2001, STRUCTURE SYNAPSES
[5]   STRUCTURE OF POSTSYNAPTIC DENSITIES ISOLATED FROM DOG CEREBRAL-CORTEX .1. OVERALL MORPHOLOGY AND PROTEIN-COMPOSITION [J].
COHEN, RS ;
BLOMBERG, F ;
BERZINS, K ;
SIEKEVITZ, P .
JOURNAL OF CELL BIOLOGY, 1977, 74 (01) :181-203
[6]   TOWARDS AUTOMATIC ELECTRON TOMOGRAPHY [J].
DIERKSEN, K ;
TYPKE, D ;
HEGERL, R ;
KOSTER, AJ ;
BAUMEISTER, W .
ULTRAMICROSCOPY, 1992, 40 (01) :71-87
[7]   CRYO-ELECTRON MICROSCOPY OF VITRIFIED SPECIMENS [J].
DUBOCHET, J ;
ADRIAN, M ;
CHANG, JJ ;
HOMO, JC ;
LEPAULT, J ;
MCDOWALL, AW ;
SCHULTZ, P .
QUARTERLY REVIEWS OF BIOPHYSICS, 1988, 21 (02) :129-228
[8]   An improved algorithm for anisotropic nonlinear diffusion for denoising cryo-tomograms [J].
Fernández, JJ ;
Li, S .
JOURNAL OF STRUCTURAL BIOLOGY, 2003, 144 (1-2) :152-161
[9]   Segmentation of two- and three-dimensional data from electron microscopy using eigenvector analysis [J].
Frangakis, AS ;
Hegerl, R .
JOURNAL OF STRUCTURAL BIOLOGY, 2002, 138 (1-2) :105-113
[10]   Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion [J].
Frangakis, AS ;
Hegerl, R .
JOURNAL OF STRUCTURAL BIOLOGY, 2001, 135 (03) :239-250