Covalent inhibitors design and discovery

被引:234
作者
De Cesco, Stephane [1 ]
Kurian, Jerry [1 ]
Dufresne, Caroline [1 ]
Mittermaier, Anthony K. [1 ]
Moitessier, Nicolas [1 ]
机构
[1] McGill Univ, Dept Chem, 801 Sherbrooke St W, Montreal, PQ H3A 0B8, Canada
关键词
Covalent drugs; Drug design; Binding kinetics; Docking; TARGET RESIDENCE TIME; ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE; UDP-N-ACETYLGLUCOSAMINE; DIPEPTIDYL PEPTIDASE-IV; ERBB FAMILY BLOCKER; DRUG DISCOVERY; KINASE INHIBITORS; NATURAL-PRODUCTS; IRREVERSIBLE INHIBITORS; ALKYLATING-AGENTS;
D O I
10.1016/j.ejmech.2017.06.019
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In the history of therapeutics, covalent drugs occupy a very distinct category. While representing a significant fraction of the drugs on the. market, very few have been deliberately designed to interact covalently with their biological target. In this review, the prevalence of covalent drugs will first be briefly covered, followed by an introduction to their mechanisms of action and more detailed discussions of their discovery and the development of safe and efficient covalent enzyme inhibitors. All stages of a drug discovery program will be covered, from target considerations to lead optimization, strategies to tune reactivity and computational methods. The goal of this article is to provide an overview of the field and to outline good practices that are needed for the proper assessment and development of covalent inhibitors as well as a good understanding of the potential and limitations of current computational methods for the design of covalent drugs. (C) 2017 Elsevier Masson SAS. All rights reserved.
引用
收藏
页码:96 / 114
页数:19
相关论文
共 126 条
[11]   Activity-based protein profiling for the functional annotation of enzymes [J].
Barglow, Katherine T. ;
Cravatt, Benjamin F. .
NATURE METHODS, 2007, 4 (10) :822-827
[12]   Time-dependent inhibition of isoprenylcysteine carboxyl methyltransferase by indole-based small molecules [J].
Baron, Rudi A. ;
Peterson, Yuri K. ;
Otto, James C. ;
Rudolph, Johannes ;
Casey, Patrick J. .
BIOCHEMISTRY, 2007, 46 (02) :554-560
[13]   Covalent inhibitors in drug discovery: from accidental discoveries to avoided liabilities and designed therapies [J].
Bauer, Renato A. .
DRUG DISCOVERY TODAY, 2015, 20 (09) :1061-1073
[14]  
Ben-Menachem E, 1999, HANDB EXP PHARM, V138, P375
[15]   Covalent docking using autodock: Two-point attractor and flexible side chain methods [J].
Bianco, Giulia ;
Forli, Stefano ;
Goodsell, David S. ;
Olson, Arthur J. .
PROTEIN SCIENCE, 2016, 25 (01) :295-301
[16]   Identification of irreversible protein splicing inhibitors as potential anti-TB drugs: insight from hybrid non-covalent/covalent docking virtual screening and molecular dynamics simulations [J].
Blake, Lauren ;
Soliman, Mahmoud E. S. .
MEDICINAL CHEMISTRY RESEARCH, 2014, 23 (05) :2312-2323
[17]  
Bradshaw JM, 2015, NAT CHEM BIOL, V11, P525, DOI [10.1038/nchembio.1817, 10.1038/NCHEMBIO.1817]
[18]   kinITC: A New Method for Obtaining Joint Thermodynamic and Kinetic Data by Isothermal Titration Calorimetry [J].
Burnouf, Dominique ;
Ennifar, Eric ;
Guedich, Sondes ;
Puffer, Barbara ;
Hoffmann, Guillaume ;
Bec, Guillaume ;
Disdier, Francois ;
Baltzinger, Mireille ;
Dumas, Philippe .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (01) :559-565
[19]   Phantom PAINS: Problems with the Utility of Alerts for Pan-Assay INterference CompoundS [J].
Capuzzi, Stephen J. ;
Muratov, Eugene N. ;
Tropsha, Alexander .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2017, 57 (03) :417-427
[20]   A mechanism-based inactivator of glycoside hydrolases involving formation of a transient non-classical carbocation [J].
Chakladar, Saswati ;
Wang, Yi ;
Clark, Thomas ;
Cheng, Lydia ;
Ko, Shirley ;
Vocadlo, David J. ;
Bennet, Andrew J. .
NATURE COMMUNICATIONS, 2014, 5