Mechanisms of Integral Membrane Protein Insertion and Folding

被引:257
作者
Cymer, Florian [1 ]
von Heijne, Gunnar [1 ,2 ]
White, Stephen H. [3 ,4 ]
机构
[1] Stockholm Univ, Dept Biochem & Biophys, Ctr Biomembrane Res, SE-10691 Stockholm, Sweden
[2] Stockholm Univ, Sci Life Lab, SE-17121 Solna, Sweden
[3] Univ Calif Irvine, Dept Physiol & Biophys, Irvine, CA 92697 USA
[4] Univ Calif Irvine, Ctr Biomembrane Syst, Irvine, CA 92697 USA
基金
欧洲研究理事会; 瑞典研究理事会;
关键词
membrane protein folding; membrane protein biogenesis; transmembrane helix; lipid-protein interactions; SIGNAL RECOGNITION PARTICLE; TRANSMEMBRANE ALPHA-HELICES; CELL-FREE SYNTHESIS; ENDOPLASMIC-RETICULUM; FREE-ENERGY; NASCENT POLYPEPTIDE; IN-VIVO; ELECTROSTATIC INTERACTIONS; HYDROPHOBICITY SCALE; SOLVATION ENERGIES;
D O I
10.1016/j.jmb.2014.09.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The biogenesis, folding, and structure of alpha-helical membrane proteins (MPs) are important to understand because they underlie virtually all physiological processes in cells including key metabolic pathways, such as the respiratory chain and the photosystems, as well as the transport of solutes and signals across membranes. Nearly all MPs require translocons-often referred to as protein-conducting channels-for proper insertion into their target membrane. Remarkable progress toward understanding the structure and functioning of translocons has been made during the past decade. Here, we review and assess this progress critically. All available evidence indicates that MPs are equilibrium structures that achieve their final structural states by folding along thermodynamically controlled pathways. The main challenge for cells is the targeting and membrane insertion of highly hydrophobic amino acid sequences. Targeting and insertion are managed in cells principally by interactions between ribosomes and membrane-embedded translocons. Our review examines the biophysical and biological boundaries of MP insertion and the folding of polytopic MPs in vivo. A theme of the review is the under-appreciated role of basic thermodynamic principles in MP folding and assembly. Thermodynamics not only dictates the final folded structure but also is the driving force for the evolution of the ribosome-translocon system of assembly. We conclude the review with a perspective suggesting a new view of translocon-guided MP insertion. (C) 2014 Elsevier Ltd. All rights reserved.
引用
收藏
页码:999 / 1022
页数:24
相关论文
共 160 条
[1]   Signal Recognition Particle: An Essential Protein-Targeting Machine [J].
Akopian, David ;
Shen, Kuang ;
Zhang, Xin ;
Shan, Shu-ou .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 82, 2013, 82 :693-721
[2]   Hydrogen-bond energetics drive helix formation in membrane interfaces [J].
Almeida, Paulo F. ;
Ladokhin, Alexey S. ;
White, Stephen H. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2012, 1818 (02) :178-182
[3]   Conformational States of Melittin at a Bilayer Interface [J].
Andersson, Magnus ;
Ulmschneider, Jakob P. ;
Ulmschneider, Martin B. ;
White, Stephen H. .
BIOPHYSICAL JOURNAL, 2013, 104 (06) :L12-L14
[4]   Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution [J].
Armache, Jean-Paul ;
Jarasch, Alexander ;
Anger, Andreas M. ;
Villa, Elizabeth ;
Becker, Thomas ;
Bhushan, Shashi ;
Jossinet, Fabrice ;
Habeck, Michael ;
Dindar, Guelcin ;
Franckenberg, Sibylle ;
Marquez, Viter ;
Mielke, Thorsten ;
Thomm, Michael ;
Berninghausen, Otto ;
Beatrix, Birgitta ;
Soeding, Johannes ;
Westhof, Eric ;
Wilson, Daniel N. ;
Beckmann, Roland .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (46) :19748-19753
[5]   The Crystal Structure of the Signal Recognition Particle in Complex with Its Receptor [J].
Ataide, Sandro F. ;
Schmitz, Nikolaus ;
Shen, Kuang ;
Ke, Ailong ;
Shan, Shu-ou ;
Doudna, Jennifer A. ;
Ban, Nenad .
SCIENCE, 2011, 331 (6019) :881-886
[6]   The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution [J].
Ban, N ;
Nissen, P ;
Hansen, J ;
Moore, PB ;
Steitz, TA .
SCIENCE, 2000, 289 (5481) :905-920
[7]   Membrane protein assembly into Nanodiscs [J].
Bayburt, Timothy H. ;
Sligar, Stephen G. .
FEBS LETTERS, 2010, 584 (09) :1721-1727
[8]   The Structure of the Eukaryotic Ribosome at 3.0 Å Resolution [J].
Ben-Shem, Adam ;
de Loubresse, Nicolas Garreau ;
Melnikov, Sergey ;
Jenner, Lasse ;
Yusupova, Gulnara ;
Yusupov, Marat .
SCIENCE, 2011, 334 (6062) :1524-1529
[9]   Free-energy determinants of alpha-helix insertion into lipid bilayers [J].
BenTal, N ;
BenShaul, A ;
Nicholls, A ;
Honig, B .
BIOPHYSICAL JOURNAL, 1996, 70 (04) :1803-1812
[10]   Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution [J].
BenTal, N ;
Sitkoff, D ;
Topol, IA ;
Yang, AS ;
Burt, SK ;
Honig, B .
JOURNAL OF PHYSICAL CHEMISTRY B, 1997, 101 (03) :450-457