Epigenomics of T cell activation, differentiation, and memory

被引:75
作者
Cuddapah, Suresh [1 ]
Barski, Artem [1 ]
Zhao, Keji [1 ]
机构
[1] NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
CYTOKINE GENE-EXPRESSION; HUMAN GENOME; HISTONE MODIFICATIONS; CHROMATIN SIGNATURES; RNA-POLYMERASE; STEM-CELLS; TGF-BETA; CHIP-SEQ; PLASTICITY; TRANSCRIPTION;
D O I
10.1016/j.coi.2010.02.007
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Activation of T cells is an essential step in the immunological response to infection. Although activation of naIve T cells results in proliferation and slow differentiation into cytokine-producing effector cells, antigen engagement with memory cells leads to cytokine production immediately. Even though the cell surface signaling events are similar in both the cases, the outcome is different, suggesting that distinct regulatory mechanisms may exist downstream of the activation signals. Recent advances in the understanding of global epigenetic patterns in T cells have resulted in the appreciation of the role of epigenetic mechanisms in processes such as activation and differentiation. In this review we discuss recent data suggesting that naive T cell activation, differentiation, and lineage commitment result in epigenetic changes and a fine balance between different histone modifications is required. On the other hand, memory T cells are poised and do not require epigenetic changes for short-term activation.
引用
收藏
页码:341 / 347
页数:7
相关论文
共 66 条
[1]   Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling [J].
Adelman, Karen ;
Kennedy, Megan A. ;
Nechaev, Sergei ;
Gilchrist, Daniel A. ;
Muse, Ginger W. ;
Chinenov, Yurii ;
Rogatsky, Inez .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (43) :18207-18212
[2]   Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation [J].
Agarwal, S ;
Rao, A .
IMMUNITY, 1998, 9 (06) :765-775
[3]   Chromatin remodeling of interleukin-17 (IL-17)-IL-17F cytokine gene locus during inflammatory helper T cell differentiation [J].
Akimzhanov, Askar M. ;
Yang, Xuexian O. ;
Dong, Chen .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (09) :5969-5972
[4]   Regulation of Th2 differentiation and Il4 locus accessibility [J].
Ansel, K. Mark ;
Djuretic, Ivana ;
Tanasa, Bogdan ;
Rao, Anjana .
ANNUAL REVIEW OF IMMUNOLOGY, 2006, 24 :607-656
[5]   Deletion of a conserved Il4 silencer impairs T helper type 1-mediated immunity [J].
Ansel, KM ;
Greenwald, RJ ;
Agarwal, S ;
Bassing, CH ;
Monticelli, S ;
Interlandi, J ;
Djuretic, IM ;
Lee, DU ;
Sharpe, AH ;
Walt, F ;
Rao, A .
NATURE IMMUNOLOGY, 2004, 5 (12) :1251-1259
[6]   Genome-wide Analysis of Histone Methylation Reveals Chromatin State-Based Regulation of Gene Transcription and Function of Memory CD8+ T Cells [J].
Araki, Yasuto ;
Wang, Zhibin ;
Zang, Chongzhi ;
Wood, William H., III ;
Schones, Dustin ;
Cui, Kairong ;
Roh, Tae-Young ;
Lhotsky, Brad ;
Wersto, Robert P. ;
Peng, Weiqun ;
Becker, Kevin G. ;
Zhao, Keji ;
Weng, Nan-ping .
IMMUNITY, 2009, 30 (06) :912-925
[7]   TH cell differentiation is accompanied by dynamic changes in histone acetylation of cytokine genes [J].
Avni, O ;
Lee, D ;
Macian, F ;
Szabo, SJ ;
Glimcher, LH ;
Rao, A .
NATURE IMMUNOLOGY, 2002, 3 (07) :643-651
[8]   Chromatin signatures of pluripotent cell lines [J].
Azuara, V ;
Perry, P ;
Sauer, S ;
Spivakov, M ;
Jorgensen, HF ;
John, RM ;
Gouti, M ;
Casanova, M ;
Warnes, G ;
Merkenschlager, M ;
Fisher, AG .
NATURE CELL BIOLOGY, 2006, 8 (05) :532-U189
[9]   Chromatin poises miRNA- and protein-coding genes for expression [J].
Barski, Artem ;
Jothi, Raja ;
Cuddapah, Suresh ;
Cui, Kairong ;
Roh, Tae-Young ;
Schones, Dustin E. ;
Zhao, Keji .
GENOME RESEARCH, 2009, 19 (10) :1742-1751
[10]   Genomic Location Analysis by ChIP-Seq [J].
Barski, Artem ;
Zhao, Keji .
JOURNAL OF CELLULAR BIOCHEMISTRY, 2009, 107 (01) :11-18