The ASRG database:: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing -: art. no. R102

被引：138

作者：

Wang, BB

Brendel, V ^{[1
]}

机构：

[1] Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA

[2] Iowa State Univ, Dept Stat, Ames, IA 50011 USA

来源：

GENOME BIOLOGY | 2004年 / 5卷 / 12期

关键词：

D O I：

10.1186/gb-2004-5-12-r102

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

A total of 74 small nuclear RNA (snRNA) genes and 395 genes encoding splicing-related proteins were identified in the Arabidopsis genome by sequence comparison and motif searches, including the previously elusive U4atac snRNA gene. Most of the genes have not been studied experimentally. Classification of these genes and detailed information on gene structure, alternative splicing, gene duplications and phylogenetic relationships are made accessible as a comprehensive database of Arabidospis Splicing Related Genes (ASRG) on our website.

引用

收藏

页数：23

相关论文

共 100 条

[81] Systematic trans-genomic comparison of protein kinases between Arabidopsis and Saccharomyces cerevisiae [J].

Wang, DG ;

Harper, JF ;

Gribskov, M .

PLANT PHYSIOLOGY, 2003, 132 (04) :2152-2165

[82] The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome [J].

Will, CL ;

Schneider, C ;

Hossbach, M ;

Urlaub, H ;

Rauhut, R ;

Elbashir, S ;

Tuschl, T ;

Lührmann, R .

RNA, 2004, 10 (06) :929-941

[83] Spliceosomal UsnRNP biogenesis, structure and function [J].

Will, CL ;

Lührmann, R .

CURRENT OPINION IN CELL BIOLOGY, 2001, 13 (03) :290-301

[84] Protein functions in pre-mRNA splicing [J].

Will, CL ;

Luhrmann, R .

CURRENT OPINION IN CELL BIOLOGY, 1997, 9 (03) :320-328

[85] Multi-query sequence BLAST output examination with MuSeqBox [J].

Xing, LQ ;

Brendel, V .

BIOINFORMATICS, 2001, 17 (08) :744-745

[86] Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis [J].

Xiong, LM ;

Gong, ZZ ;

Rock, CD ;

Subramanian, S ;

Guo, Y ;

Xu, WY ;

Galbraith, D ;

Zhu, JK .

DEVELOPMENTAL CELL, 2001, 1 (06) :771-781

[87] Sequence-specific interaction of U1 snRNA with the SMN complex [J].

Yong, JS ;

Pellizzoni, L ;

Dreyfuss, G .

EMBO JOURNAL, 2002, 21 (05) :1188-1196

[88] InterProScan - an integration platform for the signature-recognition methods in InterPro [J].

Zdobnov, EM ;

Apweiler, R .

BIOINFORMATICS, 2001, 17 (09) :847-848

[89] Purification and electron microscopic visualization of functional human spliceosomes [J].

Zhou, ZL ;

Sim, JG ;

Griffith, J ;

Reed, R .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (19) :12203-12207

[90] Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping [J].

Zhu, W ;

Schlueter, SD ;

Brendel, V .

PLANT PHYSIOLOGY, 2003, 132 (02) :469-484

← 1 2 3 4 5 6 7 8 9 10 →