共 58 条
Whole-genome views of chromatin structure
被引:23
作者:

Lodén, M
论文数: 0 引用数: 0
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机构:
Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

van Steensel, B
论文数: 0 引用数: 0
h-index: 0
机构:
Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands
机构:
[1] Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands
关键词:
chromatin;
DNA microarray;
histone;
nuclear organization;
nucleosome;
D O I:
10.1007/s10577-005-2166-z
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
DNA in eukaryotes is packed into chromatin. The basic component of chromatin is the nucleosome consisting of DNA wrapped around a histone octamer. Inside the cell nucleus, chromatin is folded into higher-order structures through various mechanisms, including repositioning of nucleosomes along the DNA, packing of nucleosomes into more condensed 3-dimensional configurations, looping of chromatin fibres, and tethering of chromosomal regions to nuclear structures. Over the past few years, new microarray-based methods have been developed for the genome-wide mapping of various aspects of chromatin structure. These methods are beginning to provide insights into the different types of chromatin and the architectural principles that govern the 3-dimensional organisation of the genome inside the nucleus.
引用
收藏
页码:289 / 298
页数:10
相关论文
共 58 条
[41]
Genome-wide location and function of DNA binding proteins
[J].
Ren, B
;
Robert, F
;
Wyrick, JJ
;
Aparicio, O
;
Jennings, EG
;
Simon, I
;
Zeitlinger, J
;
Schreiber, J
;
Hannett, N
;
Kanin, E
;
Volkert, TL
;
Wilson, CJ
;
Bell, SP
;
Young, RA
.
SCIENCE,
2000, 290 (5500)
:2306-+

Ren, B
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Robert, F
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Wyrick, JJ
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Aparicio, O
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Jennings, EG
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Simon, I
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Zeitlinger, J
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Schreiber, J
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Hannett, N
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Kanin, E
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Volkert, TL
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Wilson, CJ
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Bell, SP
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Young, RA
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
[42]
Epigenetic codes for heterochromatin formation and silencing: Rounding up the usual suspects
[J].
Richards, EJ
;
Elgin, SCR
.
CELL,
2002, 108 (04)
:489-500

Richards, EJ
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Dept Biol, St Louis, MO 63130 USA Washington Univ, Dept Biol, St Louis, MO 63130 USA

Elgin, SCR
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Dept Biol, St Louis, MO 63130 USA Washington Univ, Dept Biol, St Louis, MO 63130 USA
[43]
Genome-wide identification of DNasel hypersensitive sites using active chromatin sequence libraries
[J].
Sabo, PJ
;
Humbert, R
;
Hawrylycz, M
;
Wallace, JC
;
Dorschner, MO
;
McArthur, M
;
Stamatoyannopoulos, JA
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2004, 101 (13)
:4537-4542

Sabo, PJ
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA

Humbert, R
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA

Hawrylycz, M
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA

Wallace, JC
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA

Dorschner, MO
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA

McArthur, M
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA

Stamatoyannopoulos, JA
论文数: 0 引用数: 0
h-index: 0
机构: Regulome, Dept Mol Biol, Seattle, WA 98103 USA
[44]
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
[J].
Schübeler, D
;
MacAlpine, DM
;
Scalzo, D
;
Wirbelauer, C
;
Kooperberg, C
;
van Leeuwen, F
;
Gottschling, DE
;
O'Neill, LP
;
Turner, BM
;
Delrow, J
;
Bell, SP
;
Groudine, M
.
GENES & DEVELOPMENT,
2004, 18 (11)
:1263-1271

论文数: 引用数:
h-index:
机构:

MacAlpine, DM
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Scalzo, D
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Wirbelauer, C
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Kooperberg, C
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

van Leeuwen, F
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Gottschling, DE
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

O'Neill, LP
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Turner, BM
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Delrow, J
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Bell, SP
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA

Groudine, M
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA
[45]
Characteristic low density and shear sensitivity of cross-linked chromatin containing polycomb complexes
[J].
Schwartz, YB
;
Kahn, TG
;
Pirrotta, V
.
MOLECULAR AND CELLULAR BIOLOGY,
2005, 25 (01)
:432-439

Schwartz, YB
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Geneva, Dept Zool, Geneva, Switzerland Univ Geneva, Dept Zool, Geneva, Switzerland

Kahn, TG
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Geneva, Dept Zool, Geneva, Switzerland Univ Geneva, Dept Zool, Geneva, Switzerland

Pirrotta, V
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Geneva, Dept Zool, Geneva, Switzerland Univ Geneva, Dept Zool, Geneva, Switzerland
[46]
Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila
[J].
Sun, LV
;
Chen, L
;
Greil, F
;
Negre, N
;
Li, TR
;
Cavalli, G
;
Zhao, HY
;
van Steensel, B
;
White, KP
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003, 100 (16)
:9428-9433

Sun, LV
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

Chen, L
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

Greil, F
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

Negre, N
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

Li, TR
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

Cavalli, G
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

Zhao, HY
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

van Steensel, B
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands

White, KP
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands
[47]
The function of nuclear architecture: A genetic approach
[J].
Taddei, A
;
Hediger, F
;
Neumann, FR
;
Gasser, SM
.
ANNUAL REVIEW OF GENETICS,
2004, 38
:305-345

论文数: 引用数:
h-index:
机构:

Hediger, F
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Geneva, Dept Mol Biol, CH-1211 Geneva 4, Switzerland Univ Geneva, Dept Mol Biol, CH-1211 Geneva 4, Switzerland

Neumann, FR
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Geneva, Dept Mol Biol, CH-1211 Geneva 4, Switzerland Univ Geneva, Dept Mol Biol, CH-1211 Geneva 4, Switzerland

Gasser, SM
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Geneva, Dept Mol Biol, CH-1211 Geneva 4, Switzerland Univ Geneva, Dept Mol Biol, CH-1211 Geneva 4, Switzerland
[48]
Yeast Cohesin complex requires a conserved protein, Eco1p(Ctf7), to establish cohesion between sister chromatids during DNA replication
[J].
Tóth, A
;
Ciosk, R
;
Uhlmann, F
;
Galova, M
;
Schleiffer, A
;
Nasmyth, K
.
GENES & DEVELOPMENT,
1999, 13 (03)
:320-333

Tóth, A
论文数: 0 引用数: 0
h-index: 0
机构:
Res Inst Mol Pathol, A-1030 Vienna, Austria Res Inst Mol Pathol, A-1030 Vienna, Austria

Ciosk, R
论文数: 0 引用数: 0
h-index: 0
机构:
Res Inst Mol Pathol, A-1030 Vienna, Austria Res Inst Mol Pathol, A-1030 Vienna, Austria

Uhlmann, F
论文数: 0 引用数: 0
h-index: 0
机构:
Res Inst Mol Pathol, A-1030 Vienna, Austria Res Inst Mol Pathol, A-1030 Vienna, Austria

Galova, M
论文数: 0 引用数: 0
h-index: 0
机构:
Res Inst Mol Pathol, A-1030 Vienna, Austria Res Inst Mol Pathol, A-1030 Vienna, Austria

Schleiffer, A
论文数: 0 引用数: 0
h-index: 0
机构:
Res Inst Mol Pathol, A-1030 Vienna, Austria Res Inst Mol Pathol, A-1030 Vienna, Austria

Nasmyth, K
论文数: 0 引用数: 0
h-index: 0
机构:
Res Inst Mol Pathol, A-1030 Vienna, Austria Res Inst Mol Pathol, A-1030 Vienna, Austria
[49]
Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase
[J].
van Steensel, B
;
Henikoff, S
.
NATURE BIOTECHNOLOGY,
2000, 18 (04)
:424-428

van Steensel, B
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA

Henikoff, S
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA
[50]
Chromatin profiling using targeted DNA adenine methyltransferase
[J].
van Steensel, B
;
Delrow, J
;
Henikoff, S
.
NATURE GENETICS,
2001, 27 (03)
:304-308

van Steensel, B
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98104 USA

Delrow, J
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98104 USA

Henikoff, S
论文数: 0 引用数: 0
h-index: 0
机构: Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98104 USA