Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

被引：28

作者：

Agrawal, Ganesh Kumar ^{[1
]}

Job, Dominique ^{[2
]}

Zivy, Michel ^{[3
]}

Agrawal, Vishwanath P. ^{[1
]}

Bradshaw, Ralph A. ^{[4
]}

Dunn, Michael J. ^{[5
]}

Haynes, Paul A. ^{[6
]}

van Wijk, Klaas J. ^{[7
]}

Kikuchi, Shoshi ^{[8
]}

Renaut, Jenny ^{[9
]}

Weckwerth, Wolfram ^{[10
]}

Rakwal, Randeep ^{[1
,11
,12
]}

机构：

[1] RLABB, Kathmandu, Nepal

[2] CNRS, UCBL, INSA, Bayer CropSci Joint Lab,UMR 5240, Lyon, France

[3] Univ Paris 11, INRA, CNRS, UMR 0320,UMR 8120 Genet Vegetale, Gif Sur Yvette, France

[4] Univ Calif San Francisco, Mass Spectrometry Facil, San Francisco, CA 94143 USA

[5] Univ Coll Dublin, Sch Med & Med Sci, UCD Conway Inst Biomol & Biomed Res, Dublin, Ireland

[6] Macquarie Univ, N Ryde, NSW, Australia

[7] Cornell Univ, Dept Plant Biol, Ithaca, NY USA

[8] NIAS, Plant Genome Res Unit, Div Genome & Biodivers Res, Tsukuba, Ibaraki, Japan

[9] Ctr Rech Publ Gabriel Lippman, Dept Environm & Agrobiotechnol EVA, Belvaux, GD, Luxembourg

[10] Univ Vienna, Dept Mol Syst Biol, Vienna, Austria

[11] Showa Univ, Sch Med, Shinagawa Ku, Tokyo 142, Japan

[12] Toho Univ, Fac Sci, Dept Biol, Chiba 2748510, Japan

来源：

PROTEOMICS | 2011年 / 11卷 / 09期

关键词：

INPPO; Omics; Organism; Plant; Plant proteomics; Systems biology; PROTEIN-PROTEIN INTERACTIONS; MASS-SPECTROMETRY; METABOLIC PATHWAYS; GENOME SEQUENCE; DRAFT SEQUENCE; ARABIDOPSIS; MODEL; SYSTEMS; MAIZE; PHOSPHORYLATION;

D O I：

10.1002/pmic.201000608

中图分类号：

Q5 [生物化学];

学科分类号：

070307 [化学生物学];

摘要：

Given the essential role of proteomics in understanding the biology of plants, we are establishing a global plant proteomics organization to properly organize, preserve and disseminate collected information on plant proteomics. We call this organization 'International Plant Proteomics Organization (INPPO; http://www.inppo.com).' Ten initiatives of INPPO are outlined along with how to address them in multiple phases. As our vision is global, we sincerely hope the scientific communities around the world will come together to support and join INPPO.

引用

页码：1559 / 1568

页数：10

共 89 条

[1]

Mass spectrometry-based proteomics [J].

Aebersold, R ;

Mann, M .

NATURE, 2003, 422 (6928) :198-207

[2]

Agrawal G.K., 2008, PLANT PROTEOMICS TEC

[3]

In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed [J].

Agrawal, Ganesh Kumar ;

Hajduch, Martin ;

Graham, Katherine ;

Thelen, Jay J. .

PLANT PHYSIOLOGY, 2008, 148 (01) :504-518

[4]

Rice proteomics: A cornerstone for cereal food crop proteomes [J].

Agrawal, GK ;

Rakwal, R .

MASS SPECTROMETRY REVIEWS, 2006, 25 (01) :1-53

[5]

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].

Kaul, S ;

Koo, HL ;

Jenkins, J ;

Rizzo, M ;

Rooney, T ;

Tallon, LJ ;

Feldblyum, T ;

Nierman, W ;

Benito, MI ;

Lin, XY ;

Town, CD ;

Venter, JC ;

Fraser, CM ;

Tabata, S ;

Nakamura, Y ;

Kaneko, T ;

Sato, S ;

Asamizu, E ;

Kato, T ;

Kotani, H ;

Sasamoto, S ;

Ecker, JR ;

Theologis, A ;

Federspiel, NA ;

Palm, CJ ;

Osborne, BI ;

Shinn, P ;

Conway, AB ;

Vysotskaia, VS ;

Dewar, K ;

Conn, L ;

Lenz, CA ;

Kim, CJ ;

Hansen, NF ;

Liu, SX ;

Buehler, E ;

Altafi, H ;

Sakano, H ;

Dunn, P ;

Lam, B ;

Pham, PK ;

Chao, Q ;

Nguyen, M ;

Yu, GX ;

Chen, HM ;

Southwick, A ;

Lee, JM ;

Miranda, M ;

Toriumi, MJ ;

Davis, RW .

NATURE, 2000, 408 (6814) :796-815

[6]

Gene Ontology: tool for the unification of biology [J].

Ashburner, M ;

Ball, CA ;

Blake, JA ;

Botstein, D ;

Butler, H ;

Cherry, JM ;

Davis, AP ;

Dolinski, K ;

Dwight, SS ;

Eppig, JT ;

Harris, MA ;

Hill, DP ;

Issel-Tarver, L ;

Kasarskis, A ;

Lewis, S ;

Matese, JC ;

Richardson, JE ;

Ringwald, M ;

Rubin, GM ;

Sherlock, G .

NATURE GENETICS, 2000, 25 (01) :25-29

[7]

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics [J].

Baerenfaller, Katja ;

Grossmann, Jonas ;

Grobei, Monica A. ;

Hull, Roger ;

Hirsch-Hoffmann, Matthias ;

Yalovsky, Shaul ;

Zimmermann, Philip ;

Grossniklaus, Ueli ;

Gruissem, Wilhelm ;

Baginsky, Sacha .

SCIENCE, 2008, 320 (5878) :938-941

[8]

Sorghum genome sequencing by methylation filtration [J].

Bedell, JA ;

Budiman, MA ;

Nunberg, A ;

Citek, RW ;

Robbins, D ;

Jones, J ;

Flick, E ;

Rohlfing, T ;

Fries, J ;

Bradford, K ;

McMenamy, J ;

Smith, M ;

Holeman, H ;

Roe, BA ;

Wiley, G ;

Korf, IF ;

Rabinowicz, PD ;

Lakey, N ;

McCombie, WR ;

Jeddeloh, JA ;

Martienssen, RA .

PLOS BIOLOGY, 2005, 3 (01) :103-115

[9]

The Arabidopsis genome:: A foundation for plant research [J].

Bevan, M ;

Walsh, S .

GENOME RESEARCH, 2005, 15 (12) :1632-1642

[10]

Bourguignon J., 2008, PLANT PROTEOMICS TEC, P143

← 1 2 3 4 5 6 7 8 9 →