Increasing the efficiency of homology-directed repair for CRISPR-Cas9-induced precise gene editing in mammalian cells

被引:911
作者
Van Trung Chu [1 ]
Weber, Timm [1 ]
Wefers, Benedikt [2 ,3 ]
Wurst, Wolfgang [2 ,3 ,4 ]
Sander, Sandrine [1 ]
Rajewsky, Klaus [1 ]
Kuehn, Ralf [1 ,2 ,5 ]
机构
[1] Max Delbruck Ctr Mol Med, Berlin, Germany
[2] Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth, Neuherberg, Germany
[3] Deutsch Zentrum Neurodegenerat Erkrankungen eV, Munich, Germany
[4] Univ Munich, Munich Cluster Syst Neurol SyNergy, Munich, Germany
[5] Berlin Inst Hlth, Berlin, Germany
基金
欧洲研究理事会;
关键词
DAMAGE RESPONSE; BREAK REPAIR; DNA; RECEPTOR; PROTEIN; KINASE; KU70;
D O I
10.1038/nbt.3198
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The insertion of precise genetic modifications by genome editing tools such as CRISPR-Cas9 is limited by the relatively low efficiency of homology-directed repair (HDR) compared with the higher efficiency of the nonhomologous end-joining (NHEJ) pathway. To enhance HDR, enabling the insertion of precise genetic modifications, we suppressed the NHEJ key molecules KU70, KU80 or DNA ligase IV by gene silencing, the ligase IV inhibitor SCR7 or the coexpression of adenovirus 4 E1B55K and E4orf6 proteins in a 'traffic light' and other reporter systems. Suppression of KU70 and DNA ligase IV promotes the efficiency of HDR 4-5-fold. When co-expressed with the Cas9 system, E1B55K and E4orf6 improved the efficiency of HDR up to eightfold and essentially abolished NHEJ activity in both human and mouse cell lines. Our findings provide useful tools to improve the frequency of precise gene modifications in mammalian cells.
引用
收藏
页码:543 / U160
页数:8
相关论文
共 29 条
[21]   Knockdown of DNA ligase IV/XRCC4 by RNA interference inhibits herpes simplex virus type I DNA replication [J].
Muylaert, Isabella ;
Elias, Per .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (15) :10865-10872
[22]   Push back to respond better: regulatory inhibition of the DNA double-strand break response [J].
Panier, Stephanie ;
Durocher, Daniel .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2013, 14 (10) :661-672
[23]   TARGETED INTEGRATION OF ADENOASSOCIATED VIRUS (AAV) INTO HUMAN CHROMOSOME-19 [J].
SAMULSKI, RJ ;
ZHU, X ;
XIAO, X ;
BROOK, JD ;
HOUSMAN, DE ;
EPSTEIN, N ;
HUNTER, LA .
EMBO JOURNAL, 1991, 10 (12) :3941-3950
[24]   Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells [J].
Shalem, Ophir ;
Sanjana, Neville E. ;
Hartenian, Ella ;
Shi, Xi ;
Scott, David A. ;
Mikkelsen, Tarjei S. ;
Heckl, Dirk ;
Ebert, Benjamin L. ;
Root, David E. ;
Doench, John G. ;
Zhang, Feng .
SCIENCE, 2014, 343 (6166) :84-87
[25]   A Mouse Geneticist's Practical Guide to CRISPR Applications [J].
Singh, Priti ;
Schimenti, John C. ;
Bolcun-Filas, Ewelina .
GENETICS, 2015, 199 (01) :1-U402
[26]   PI3 Kinase Signals BCR-Dependent Mature B Cell Survival [J].
Srinivasan, Lakshmi ;
Sasaki, Yoshiteru ;
Calado, Dinis Pedro ;
Zhang, Baochun ;
Paik, Ji Hye ;
DePinho, Ronald A. ;
Kutok, Jeffrey L. ;
Kearney, John F. ;
Otipoby, Kevin L. ;
Rajewsky, Klaus .
CELL, 2009, 139 (03) :573-586
[27]   An Inhibitor of Nonhomologous End-Joining Abrogates Double-Strand Break Repair and Impedes Cancer Progression [J].
Srivastava, Mrinal ;
Nambiar, Mridula ;
Sharma, Sheetal ;
Karki, Subhas S. ;
Goldsmith, G. ;
Hegde, Mahesh ;
Kumar, Sujeet ;
Pandey, Monica ;
Singh, Ram K. ;
Ray, Pritha ;
Natarajan, Renuka ;
Kelkar, Madhura ;
De, Abhijit ;
Choudhary, Bibha ;
Raghavan, Sathees C. .
CELL, 2012, 151 (07) :1474-1487
[28]   Low levels of DNA Ligases III and IV sufficient for effective NHEJ [J].
Windhofer, Frank ;
Wu, Wenqi ;
Iliakis, George .
JOURNAL OF CELLULAR PHYSIOLOGY, 2007, 213 (02) :475-483
[29]   Histone Modifications: Crucial Elements for Damage Response and Chromatin Restoration [J].
Zhu, Qianzheng ;
Wani, Altaf A. .
JOURNAL OF CELLULAR PHYSIOLOGY, 2010, 223 (02) :283-288