An experimental metagenome data management and analysis system

被引：57

作者：

Markowitz, Victor M. ^{[1
]}

Ivanova, Natalia ^{[1
]}

Palaniappan, Krishna ^{[1
]}

Szeto, Ernest ^{[1
]}

Korzeniewski, Frank ^{[1
]}

Lykidis, Athanasios ^{[1
]}

Anderson, Iain ^{[1
]}

Mavrommatis, Konstantinos ^{[1
]}

Kunin, Victor ^{[1
]}

Martin, Hector Garcia ^{[1
]}

Dubchak, Inna ^{[1
]}

Hugenholtz, Phil ^{[1
]}

Kyrpides, Nikos C. ^{[1
]}

机构：

[1] Lawrence Berkeley Natl Lab, Biostat Data Management & Ctr, Berkeley, CA 94720 USA

来源：

BIOINFORMATICS | 2006年 / 22卷 / 14期

关键词：

D O I：

10.1093/bioinformatics/btl217

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The application of shotgun sequencing to environmental samples has revealed a new universe of microbial community genomes (metagenomes) involving previously uncultured organisms. Metagenome analysis, which is expected to provide a comprehensive picture of the gene functions and metabolic capacity for microbial communities, needs to be conducted in the context of a comprehensive data management and analysis system. We present in this paper IMG/M, an experimental metagenome data management and analysis system that is based on the Integrated Microbial Genomes (IMG) system. IMG/M provides tools and viewers for analyzing both metagenomes and isolate genomes individually or in a comparative context. IMG/M is available at http://img.jgi.doe.gov/m.

引用

页码：E359 / E367

页数：9

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