共 50 条
Optimizing non-natural protein function with directed evolution
被引:195
作者:

Brustad, Eric M.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA

Arnold, Frances H.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA
CALTECH, Dept Bioengn, Pasadena, CA 91125 USA CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA
机构:
[1] CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA
[2] CALTECH, Dept Bioengn, Pasadena, CA 91125 USA
关键词:
ARTIFICIAL METALLOENZYMES;
GENETIC-CODE;
COMPUTATIONAL DESIGN;
AMINO-ACID;
CATALYSTS;
SITE;
STREPTAVIDIN;
EXPRESSION;
FITNESS;
D O I:
10.1016/j.cbpa.2010.11.020
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Developing technologies such as unnatural amino acid mutagenesis, non-natural cofactor engineering, and computational design are generating proteins with novel functions; these proteins, however, often do not reach performance targets and would benefit from further optimization. Evolutionary methods can complement these approaches: recent work combining unnatural amino acid mutagenesis and phage selection has created useful proteins of novel composition. Weak initial activity in a computationally designed enzyme has been improved by iterative rounds of mutagenesis and screening. A marriage of ingenuity and evolution will expand the scope of protein function well beyond Mother Nature's designs.
引用
收藏
页码:201 / 210
页数:10
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[1]
Selection and characterization of Escherichia coli variants capable of growth on an otherwise toxic tryptophan analogue
[J].
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;
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.
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:5414-5425

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[2]
An exciting but challenging road ahead for computational enzyme design
[J].
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.
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:1817-1819

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[3]
X-ray structure and designed evolution of an artificial transfer hydrogenase
[J].
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;
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;
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;
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;
Letondor, Christophe
;
Ivanova, Anita
;
Le Trong, Isolde
;
Stenkamp, Ronald E.
;
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.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION,
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:1400-1404

论文数: 引用数:
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[4]
Designed evolution of artificial metalloenzymes: protein catalysts made to order
[J].
Creus, Marc
;
Ward, Thomas R.
.
ORGANIC & BIOMOLECULAR CHEMISTRY,
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:1835-1844

论文数: 引用数:
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[5]
A General Method for Scanning Unnatural Amino Acid Mutagenesis
[J].
Daggett, Kelly A.
;
Layer, Mark
;
Cropp, T. Ashton
.
ACS CHEMICAL BIOLOGY,
2009, 4 (02)
:109-113

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[6]
In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons
[J].
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;
Hodas, Jennifer J. L.
;
Gouzer, Geraldine
;
Shadrin, Ilya Y.
;
Ngo, John T.
;
Triller, Antoine
;
Tirrell, David A.
;
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.
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:897-U149

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论文数: 0 引用数: 0
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[7]
Immunochemical termination of self-tolerance
[J].
Gruenewald, Jan
;
Tsao, Meng-Lin
;
Perera, Roshan
;
Dong, Liqun
;
Niessen, Frank
;
Wen, Ben G.
;
Kubitz, Diane M.
;
Smider, Vaughn V.
;
Ruf, Wolfram
;
Nasoff, Marc
;
Lerner, Richard A.
;
Schultz, Peter G.
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2008, 105 (32)
:11276-11280

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论文数: 0 引用数: 0
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Niessen, Frank
论文数: 0 引用数: 0
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Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA

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Scripps Res Inst, Dept Immunol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA

Smider, Vaughn V.
论文数: 0 引用数: 0
h-index: 0
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Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA

Ruf, Wolfram
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Immunol, La Jolla, CA 92037 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA

Nasoff, Marc
论文数: 0 引用数: 0
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Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA

Lerner, Richard A.
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA

Schultz, Peter G.
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Novartis Res Fdn, Genom Inst, San Diego, CA 92121 USA Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
[8]
Design strategies for the creation of artificial metalloenzymes
[J].
Heinisch, Tillmann
;
Ward, Thomas R.
.
CURRENT OPINION IN CHEMICAL BIOLOGY,
2010, 14 (02)
:184-199

论文数: 引用数:
h-index:
机构:

Ward, Thomas R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Basel, Dept Chem, CH-4056 Basel, Switzerland Univ Basel, Dept Chem, CH-4056 Basel, Switzerland
[9]
Biocatalysts by evolution
[J].
Jaeckel, Christian
;
Hilvert, Donald
.
CURRENT OPINION IN BIOTECHNOLOGY,
2010, 21 (06)
:753-759

Jaeckel, Christian
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Organ Chem Lab, CH-8093 Zurich, Switzerland Swiss Fed Inst Technol, Organ Chem Lab, CH-8093 Zurich, Switzerland

Hilvert, Donald
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Organ Chem Lab, CH-8093 Zurich, Switzerland Swiss Fed Inst Technol, Organ Chem Lab, CH-8093 Zurich, Switzerland
[10]
De novo computational design of retro-aldol enzymes
[J].
Jiang, Lin
;
Althoff, Eric A.
;
Clemente, Fernando R.
;
Doyle, Lindsey
;
Rothlisberger, Daniela
;
Zanghellini, Alexandre
;
Gallaher, Jasmine L.
;
Betker, Jamie L.
;
Tanaka, Fujie
;
Barbas, Carlos F., III
;
Hilvert, Donald
;
Houk, Kendall N.
;
Stoddard, Barry L.
;
Baker, David
.
SCIENCE,
2008, 319 (5868)
:1387-1391

论文数: 引用数:
h-index:
机构:

Althoff, Eric A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Clemente, Fernando R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Doyle, Lindsey
论文数: 0 引用数: 0
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Rothlisberger, Daniela
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Zanghellini, Alexandre
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Gallaher, Jasmine L.
论文数: 0 引用数: 0
h-index: 0
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Betker, Jamie L.
论文数: 0 引用数: 0
h-index: 0
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Univ Washington, Dept Biochem, Seattle, WA 98195 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Tanaka, Fujie
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Biol Mol, La Jolla, CA 92037 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Barbas, Carlos F., III
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Biol Mol, La Jolla, CA 92037 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Hilvert, Donald
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Organ Chem Lab, CH-8093 Zurich, Switzerland Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Houk, Kendall N.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Stoddard, Barry L.
论文数: 0 引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA Univ Washington, Dept Biochem, Seattle, WA 98195 USA

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