(4,2)D projection-reconstruction experiments for protein backbone assignment:: Application to human carbonic anhydrase II and calbindin D28K

被引:38
作者
Venters, RA [1 ]
Coggins, BE
Kojetin, D
Cavanagh, J
Zhou, P
机构
[1] Duke Univ, Med Ctr, NMR Ctr, Durham, NC 27710 USA
[2] Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
[3] N Carolina State Univ, Dept Mol & Struct Biochem, Raleigh, NC 27695 USA
关键词
D O I
10.1021/ja0509580
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Projection -reconstruction NMR experiments have been shown to significantly reduce the acquisition time required to obtain protein backbone assignment data. To date, this concept has only been applied to smaller N-15/C-13-Iabeled proteins. Here, we show that projection- reconstruction NMR techniques can be extended to larger protonated and perdeuterated proteins. We present a suite of (4,2)D triple-resonance experiments for protein backbone assignment and a Hybrid Backprojection/Lower-Value algorithm for reconstructing data with relatively weak signal-to-noise ratios. In addition, we propose a sampling theorem and discuss its implication on the choice of projection angles. We demonstrate the efficacy of this approach using the 29 kDa protein, human carbonic anhydrase 11 and the 30 kDa protein, calbindin D-28K.
引用
收藏
页码:8785 / 8795
页数:11
相关论文
共 61 条
[1]  
[Anonymous], 1999, BOOK
[2]   G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment [J].
Atreya, HS ;
Szyperski, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (26) :9642-9647
[3]   Optimized set of two-dimensional experiments for fast sequential assignment, secondary structure determination, and backbone fold validation of 13C/15N-labelled proteins [J].
Bersch, B ;
Rossy, E ;
Covès, J ;
Brutscher, B .
JOURNAL OF BIOMOLECULAR NMR, 2003, 27 (01) :57-67
[4]   DESIGN OF A COMPLETE SET OF 2-DIMENSIONAL TRIPLE-RESONANCE EXPERIMENTS FOR ASSIGNING LABELED PROTEINS [J].
BRUTSCHER, B ;
SIMORRE, JP ;
CAFFREY, MS ;
MARION, D .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1994, 105 (01) :77-82
[5]   Regularization of the two-dimensional filter diagonalization method: FDM2K [J].
Chen, JH ;
Mandelshtam, VA ;
Shaka, AJ .
JOURNAL OF MAGNETIC RESONANCE, 2000, 146 (02) :363-368
[6]   Generalized reconstruction of n-D NMR spectra from multiple projections:: Application to the 5-D HACACONH spectrum of protein G B1 domain [J].
Coggins, BE ;
Venters, RA ;
Zhou, P .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (04) :1000-1001
[7]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[8]   Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins [J].
Ding, KY ;
Gronenborn, AM .
JOURNAL OF MAGNETIC RESONANCE, 2002, 156 (02) :262-268
[9]  
Feng WQ, 1996, J BIOMOL NMR, V8, P98
[10]   Distant echoes of the accordion: Reduced dimensionality, GFT-NMR, and projection-reconstruction of multidimensional spectra [J].
Freeman, R ;
Kupce, E .
CONCEPTS IN MAGNETIC RESONANCE PART A, 2004, 23A (02) :63-75