SAIL-a software system for sample and phenotype availability across biobanks and cohorts

被引：12

作者：

Gostev, Mikhail ^{[1
]}

Fernandez-Banet, Julio ^{[1
]}

Rung, Johan ^{[1
]}

Dietrich, Joern ^{[1
]}

Prokopenko, Inga ^{[2
,3
]}

Ripatti, Samuli ^{[4
,5
]}

McCarthy, Mark I. ^{[2
,3
]}

Brazma, Alvis ^{[1
]}

Krestyaninova, Maria ^{[4
]}

机构：

[1] European Mol Biol Lab, EMBL EBI, Cambridge CB10 1SD, England

[2] Churchill Hosp, Oxford Ctr Diabet Endocrinol & Metab, Oxford OX3 7LJ, England

[3] Univ Oxford, Wellcome Trust Ctr Human Genet, Oxford OX3 7BN, England

[4] Univ Helsinki, Inst Mol Med Finland FIMM, FIN-00014 Helsinki, Finland

[5] Natl Inst Hlth & Welf, Helsinki 00271, Finland

来源：

BIOINFORMATICS | 2011年 / 27卷 / 04期

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btq693

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The Sample avAILability system-SAIL-is a web based application for searching, browsing and annotating biological sample collections or biobank entries. By providing individual-level information on the availability of specific data types (phenotypes, genetic or genomic data) and samples within a collection, rather than the actual measurement data, resource integration can be facilitated. A flexible data structure enables the collection owners to provide descriptive information on their samples using existing or custom vocabularies. Users can query for the available samples by various parameters combining them via logical expressions. The system can be scaled to hold data from millions of samples with thousands of variables.

引用

页码：589 / 591

页数：3

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