Designer RNA-binding proteins New tools for manipulating the transcriptome

被引:35
作者
Filipovska, Aleksandra
Rackham, Oliver [1 ]
机构
[1] Univ Western Australia, Western Australian Inst Med Res, Perth, WA 6009, Australia
关键词
RNA-protein interactions; splicing; RNA localization; translation; protein engineering; SINGLE-STRANDED RNA; MESSENGER-RNA; CRYSTAL-STRUCTURE; HUMAN PUMILIO; LIVING CELLS; IN-VITRO; GENE; RECOGNITION; SPECIFICITY; REVEALS;
D O I
10.4161/rna.8.6.17907
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Post-transcriptional regulation of gene expression is ubiquitous and fundamental for the control of cell growth, differentiation and the complex developmental programs of multicellular eukaryotes. Despite this realization, the current tools that are available to study RNAs are limited in many respects. Recently we expanded the RNA recognition code of Pumilio and FBF homology (PUF) proteins, enabling RNA-binding proteins with programmable specificities to be designed. The design of proteins that can bind any RNA sequence of interest and modulate its function will be important to elucidate the mechanisms by which gene expression is controlled at the level of RNA and may provide potential therapeutics in the future.
引用
收藏
页码:978 / 983
页数:6
相关论文
共 60 条
[1]   Sequence-specific binding of single-stranded RNA: is there a code for recognition? [J].
Auweter, Sigrid D. ;
Oberstrass, Florian C. ;
Allain, Frederic H. -T. .
NUCLEIC ACIDS RESEARCH, 2006, 34 (17) :4943-4959
[2]  
Baron-Benhamou Julie, 2004, Methods Mol Biol, V257, P135, DOI 10.1385/1-59259-750-5:135
[3]   Localization of ASH1 mRNA particles in living yeast [J].
Bertrand, E ;
Chartrand, P ;
Schaefer, M ;
Shenoy, SM ;
Singer, RH ;
Long, RM .
MOLECULAR CELL, 1998, 2 (04) :437-445
[4]   Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors [J].
Boch, Jens ;
Scholze, Heidi ;
Schornack, Sebastian ;
Landgraf, Angelika ;
Hahn, Simone ;
Kay, Sabine ;
Lahaye, Thomas ;
Nickstadt, Anja ;
Bonas, Ulla .
SCIENCE, 2009, 326 (5959) :1509-1512
[5]   BCL-X, A BCL-2-RELATED GENE THAT FUNCTIONS AS A DOMINANT REGULATOR OF APOPTOTIC CELL-DEATH [J].
BOISE, LH ;
GONZALEZGARCIA, M ;
POSTEMA, CE ;
DING, LY ;
LINDSTEN, T ;
TURKA, LA ;
MAO, XH ;
NUNEZ, G ;
THOMPSON, CB .
CELL, 1993, 74 (04) :597-608
[6]   Origins and Mechanisms of miRNAs and siRNAs [J].
Carthew, Richard W. ;
Sontheimer, Erik J. .
CELL, 2009, 136 (04) :642-655
[7]   Engineering RNA sequence specificity of Pumilio repeats [J].
Cheong, Cheorn-Gil ;
Hall, Traci M. Tanaka .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (37) :13635-13639
[8]   The BCL-2 Family Reunion [J].
Chipuk, Jerry E. ;
Moldoveanu, Tudor ;
Llambi, Fabien ;
Parsons, Melissa J. ;
Green, Douglas R. .
MOLECULAR CELL, 2010, 37 (03) :299-310
[9]   Tethered function assays: An adaptable approach to study RNA regulatory proteins [J].
Coller, Jeff ;
Wickens, Marv .
TRANSLATION INITIATION: EXTRACT SYSTEMS AND MOLECULAR GENETICS, 2007, 429 :299-321
[10]   mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation [J].
Coller, JM ;
Gray, NK ;
Wickens, MP .
GENES & DEVELOPMENT, 1998, 12 (20) :3226-3235