The Future of Digital Polymerase Chain Reaction in Virology
被引:42
作者:
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机构:
Vynck, Matthijs
[1
]
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Trypsteen, Wim
[2
]
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Thas, Olivier
[1
,3
]
Vandekerckhove, Linos
论文数: 0引用数: 0
h-index: 0
机构:
Univ Ghent, Dept Internal Med, HIV Translat Res Unit, Depintelaan 185, B-9000 Ghent, BelgiumUniv Ghent, Dept Math Modelling Stat & Bioinformat, Ghent, Belgium
Vandekerckhove, Linos
[2
]
De Spiegelaere, Ward
论文数: 0引用数: 0
h-index: 0
机构:
Univ Ghent, Dept Internal Med, HIV Translat Res Unit, Depintelaan 185, B-9000 Ghent, BelgiumUniv Ghent, Dept Math Modelling Stat & Bioinformat, Ghent, Belgium
De Spiegelaere, Ward
[2
]
机构:
[1] Univ Ghent, Dept Math Modelling Stat & Bioinformat, Ghent, Belgium
[2] Univ Ghent, Dept Internal Med, HIV Translat Res Unit, Depintelaan 185, B-9000 Ghent, Belgium
[3] Univ Wollongong, Natl Inst Appl Stat Res Australia, Sch Math & Appl Stat, Wollongong, NSW, Australia
DNA COPY NUMBER;
GUIDELINES MINIMUM INFORMATION;
REAL-TIME PCR;
ABSOLUTE QUANTIFICATION;
QUANTITATIVE PCR;
ACCURATE QUANTIFICATION;
HIGH-THROUGHPUT;
VIRAL LOAD;
HIV-1;
DNA;
RT-QPCR;
D O I:
10.1007/s40291-016-0224-1
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
Driven by its potential benefits over currently available methods, and the recent development of commercial platforms, digital polymerase chain reaction (dPCR) has received increasing attention in virology research and diagnostics as a tool for the quantification of nucleic acids. The current technologies are more precise and accurate, but may not be much more sensitive, compared with quantitative PCR (qPCR) applications. The most promising applications with the current technology are the analysis of mutated sequences, such as emerging drug-resistant mutations. Guided by the recent literature, this review focuses on three aspects that demonstrate the potential of dPCR for virology researchers and clinicians: the applications of dPCR within both virology research and clinical virology, the benefits of the technique over the currently used real-time qPCR, and the importance and availability of specific data analysis approaches for dPCR. Comments are provided on current drawbacks and often overlooked pitfalls that need further attention to allow widespread implementation of dPCR as an accurate and precise tool within the field of virology.
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
Sedlak, Ruth Hall
Jerome, Keith R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Vaccine & Infect Dis Div, Program Infect Dis, Seattle, WA 98109 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Sedlak, Ruth Hall
Cook, Linda
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Cook, Linda
Huang, Meei-Li
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Huang, Meei-Li
Magaret, Amalia
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Program Infect Dis, Vaccine & Infect Dis Div, Seattle, WA 98104 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Magaret, Amalia
Zerr, Danielle M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Med, Seattle, WA 98195 USA
Seattle Childrens Hosp, Dept Pediat, Seattle, WA USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Zerr, Danielle M.
Boeckh, Michael
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Program Infect Dis, Vaccine & Infect Dis Div, Seattle, WA 98104 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Boeckh, Michael
Jerome, Keith R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Program Infect Dis, Vaccine & Infect Dis Div, Seattle, WA 98104 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
Sedlak, Ruth Hall
Jerome, Keith R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Vaccine & Infect Dis Inst, Seattle, WA 98104 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
Sedlak, Ruth Hall
Jerome, Keith R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Vaccine & Infect Dis Div, Program Infect Dis, Seattle, WA 98109 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Sedlak, Ruth Hall
Cook, Linda
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Cook, Linda
Huang, Meei-Li
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Huang, Meei-Li
Magaret, Amalia
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Program Infect Dis, Vaccine & Infect Dis Div, Seattle, WA 98104 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Magaret, Amalia
Zerr, Danielle M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Med, Seattle, WA 98195 USA
Seattle Childrens Hosp, Dept Pediat, Seattle, WA USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Zerr, Danielle M.
Boeckh, Michael
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Program Infect Dis, Vaccine & Infect Dis Div, Seattle, WA 98104 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Boeckh, Michael
Jerome, Keith R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Program Infect Dis, Vaccine & Infect Dis Div, Seattle, WA 98104 USAUniv Washington, Med Ctr, Dept Lab Med, Seattle, WA 98195 USA
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA
Sedlak, Ruth Hall
Jerome, Keith R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Washington, Dept Lab Med, Seattle, WA 98195 USA
Fred Hutchinson Canc Res Ctr, Vaccine & Infect Dis Inst, Seattle, WA 98104 USAUniv Washington, Dept Lab Med, Seattle, WA 98195 USA