The impact of bacterial genomics on natural product research

被引:188
作者
Bode, HB [1 ]
Müller, R [1 ]
机构
[1] Univ Saarland, Inst Pharmazeut Biotechnol, D-66041 Saarbrucken, Germany
关键词
combinatorial biosynthesis; genomics; heterologous expession; natural products;
D O I
10.1002/anie.200501080
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
"There's life in the old dog yet!" This adage also holds true for natural product research. After the era of natural products was declared to be over, because of the introduction of combinatorial synthesis techniques, natural product research has taken a surprising turn back towards a major field of pharmaceutical research. Current challenges, such as emerging multidrug-resistant bacteria, might be overcome by developments which combine genomic knowledge with applied biology and chemistry to identify, produce, and alter the structure of new lead compounds. Significant biological activity is reported much less frequently for synthetic compounds, a fact reflected in the large proportion of natural products and their derivatives in clinical use. This Review describes the impact of microbial genomics on natural products research, in particularly the search for new lead structures and their optimization. The limitations of this research are also discussed, thus allowing a look into future developments. © 2005 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:6828 / 6846
页数:19
相关论文
共 226 条
[11]   Possibility of bacterial recruitment of plant genes associated with the biosynthesis of secondary metabolites [J].
Bode, HB ;
Müller, R .
PLANT PHYSIOLOGY, 2003, 132 (03) :1153-1161
[12]  
Bode HB, 2002, CHEMBIOCHEM, V3, P619, DOI 10.1002/1439-7633(20020703)3:7<619::AID-CBIC619>3.0.CO
[13]  
2-9
[14]  
Bode HB, 2000, EUR J ORG CHEM, V2000, P3185
[15]   Libraries from natural product-like scaffolds [J].
Boldi, AM .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2004, 8 (03) :281-286
[16]   New natural product families from an environmental DNA (eDNA) gene cluster [J].
Brady, SF ;
Chao, CJ ;
Clardy, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (34) :9968-9969
[17]   Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA [J].
Brady, SF ;
Chao, CJ ;
Handelsman, J ;
Clardy, J .
ORGANIC LETTERS, 2001, 3 (13) :1981-1984
[18]   Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA [J].
Brady, SF ;
Clardy, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (51) :12903-12904
[19]   The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 [J].
Buell, CR ;
Joardar, V ;
Lindeberg, M ;
Selengut, J ;
Paulsen, IT ;
Gwinn, ML ;
Dodson, RJ ;
Deboy, RT ;
Durkin, AS ;
Kolonay, JF ;
Madupu, R ;
Daugherty, S ;
Brinkac, L ;
Beanan, MJ ;
Haft, DH ;
Nelson, WC ;
Davidsen, T ;
Zafar, N ;
Zhou, LW ;
Liu, J ;
Yuan, QP ;
Khouri, H ;
Fedorova, N ;
Tran, B ;
Russell, D ;
Berry, K ;
Utterback, T ;
Van Aken, SE ;
Feldblyum, TV ;
D'Ascenzo, M ;
Deng, WL ;
Ramos, AR ;
Alfano, JR ;
Cartinhour, S ;
Chatterjee, AK ;
Delaney, TP ;
Lazarowitz, SG ;
Martin, GB ;
Schneider, DJ ;
Tang, XY ;
Bender, CL ;
White, O ;
Fraser, CM ;
Collmer, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (18) :10181-10186
[20]   Search and discovery strategies for biotechnology: The paradigm shift [J].
Bull, AT ;
Ward, AC ;
Goodfellow, M .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2000, 64 (03) :573-+