The impact of bacterial genomics on natural product research

被引:188
作者
Bode, HB [1 ]
Müller, R [1 ]
机构
[1] Univ Saarland, Inst Pharmazeut Biotechnol, D-66041 Saarbrucken, Germany
关键词
combinatorial biosynthesis; genomics; heterologous expession; natural products;
D O I
10.1002/anie.200501080
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
"There's life in the old dog yet!" This adage also holds true for natural product research. After the era of natural products was declared to be over, because of the introduction of combinatorial synthesis techniques, natural product research has taken a surprising turn back towards a major field of pharmaceutical research. Current challenges, such as emerging multidrug-resistant bacteria, might be overcome by developments which combine genomic knowledge with applied biology and chemistry to identify, produce, and alter the structure of new lead compounds. Significant biological activity is reported much less frequently for synthetic compounds, a fact reflected in the large proportion of natural products and their derivatives in clinical use. This Review describes the impact of microbial genomics on natural products research, in particularly the search for new lead structures and their optimization. The limitations of this research are also discussed, thus allowing a look into future developments. © 2005 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:6828 / 6846
页数:19
相关论文
共 226 条
[41]   NOVEL AVERMECTINS PRODUCED BY MUTATIONAL BIOSYNTHESIS [J].
DUTTON, CJ ;
GIBSON, SP ;
GOUDIE, AC ;
HOLDOM, KS ;
PACEY, MS ;
RUDDOCK, JC ;
BULOCK, JD ;
RICHARDS, MK .
JOURNAL OF ANTIBIOTICS, 1991, 44 (03) :357-365
[42]   Aminoacyl-SNACs as small-molecule substrates for the condensation domains of nonribosomal peptide synthetases [J].
Ehmann, DE ;
Trauger, JW ;
Stachelhaus, T ;
Walsh, CT .
CHEMISTRY & BIOLOGY, 2000, 7 (10) :765-772
[43]   Characterization of the mupirocin biosynthesis gene cluster from Pseudomonas fluorescens NCIMB 10586 [J].
El-Sayed, AK ;
Hothersall, J ;
Cooper, SM ;
Stephens, E ;
Simpson, TJ ;
Thomas, CM .
CHEMISTRY & BIOLOGY, 2003, 10 (05) :419-430
[44]   Engineered biosynthesis of the peptide antibiotic bacitracin in the surrogate host Bacillus subtilis [J].
Eppelmann, K ;
Doekel, S ;
Marahiel, MA .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (37) :34824-34831
[45]   Property distributions: Differences between drugs, natural products, and molecules from combinatorial chemistry [J].
Feher, M ;
Schmidt, JM .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2003, 43 (01) :218-227
[46]   Natural products - a simple model to explain chemical diversity [J].
Firn, RD ;
Jones, CG .
NATURAL PRODUCT REPORTS, 2003, 20 (04) :382-391
[47]   WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD [J].
FLEISCHMANN, RD ;
ADAMS, MD ;
WHITE, O ;
CLAYTON, RA ;
KIRKNESS, EF ;
KERLAVAGE, AR ;
BULT, CJ ;
TOMB, JF ;
DOUGHERTY, BA ;
MERRICK, JM ;
MCKENNEY, K ;
SUTTON, G ;
FITZHUGH, W ;
FIELDS, C ;
GOCAYNE, JD ;
SCOTT, J ;
SHIRLEY, R ;
LIU, LI ;
GLODEK, A ;
KELLEY, JM ;
WEIDMAN, JF ;
PHILLIPS, CA ;
SPRIGGS, T ;
HEDBLOM, E ;
COTTON, MD ;
UTTERBACK, TR ;
HANNA, MC ;
NGUYEN, DT ;
SAUDEK, DM ;
BRANDON, RC ;
FINE, LD ;
FRITCHMAN, JL ;
FUHRMANN, JL ;
GEOGHAGEN, NSM ;
GNEHM, CL ;
MCDONALD, LA ;
SMALL, KV ;
FRASER, CM ;
SMITH, HO ;
VENTER, JC .
SCIENCE, 1995, 269 (5223) :496-512
[48]   Antibiotic biosynthesis: from natural to unnatural compounds [J].
Floss, HG .
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 2001, 27 (03) :183-194
[49]   Antibiotic optimization via in vitro glycorandomization [J].
Fu, X ;
Albermann, C ;
Jiang, JQ ;
Liao, JC ;
Zhang, CS ;
Thorson, JS .
NATURE BIOTECHNOLOGY, 2003, 21 (12) :1467-1469
[50]  
Fuchser J, 1997, LIEBIGS ANN-RECL, P87