Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy

被引:79
作者
Milazzo, Anna-Clare [2 ]
Cheng, Anchi [1 ]
Moeller, Arne [1 ]
Lyumkis, Dmitry [1 ]
Jacovetty, Erica [1 ]
Polukas, James [1 ]
Ellisman, Mark H. [3 ,4 ]
Nguyen-Huu Xuong [2 ]
Carragher, Bridget [1 ]
Potter, Clinton S. [1 ]
机构
[1] Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA
[2] Univ Calif San Diego, Dept Chem & Biochem, La Jolla, CA 92093 USA
[3] Univ Calif San Diego, Ctr Res Biol Syst, Natl Ctr Microscopy & Imaging Res, La Jolla, CA 92093 USA
[4] Univ Calif San Diego, Dept Neurosci, La Jolla, CA 92093 USA
基金
美国国家卫生研究院;
关键词
TEM; Cryo-electron microscopy; Direct detection device; Active pixel sensor; CMOS devices; ACTIVE PIXEL SENSOR; NEW-GENERATION; CCD CAMERAS; ELECTRON; VISUALIZATION; ACQUISITION; IMAGES; GROEL;
D O I
10.1016/j.jsb.2011.09.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We report on initial results of using a new direct detection device (DDD) for single particle reconstruction of vitreous ice embedded specimens. Images were acquired on a Tecnai F20 at 200 key and a nominal magnification of 29,000x. This camera has a significantly improved signal to noise ratio and modulation transfer function (MTF) at 200 key compared to a standard CCD camera installed on the same microscope. Control of the DDD has been integrated into Leginon, an automated data collection system. Using GroEL as a test specimen, we obtained images of similar to 30 K particles with the CCD and the DDD from the same specimen sample using essentially identical imaging conditions. Comparison of the maps reconstructed from the CCD images and the DDD images demonstrates the improved performance of the DDD. We also obtained a 3D reconstruction from similar to 70 K GroEL particles acquired using the DOD; the quality of the density map demonstrates the potential of this new recording device for cryoEM data acquisition. (C) 2011 Elsevier Inc. All rights reserved.
引用
收藏
页码:404 / 408
页数:5
相关论文
共 26 条
[1]   A rad-hard CMOS active pixel sensor for electron microscopy [J].
Battaglia, Marco ;
Contarato, Devis ;
Denes, Peter ;
Doering, Dionisio ;
Giubilato, Piero ;
Kim, Tae Sung ;
Mattiazzo, Serena ;
Radmilovic, Velimir ;
Zalusky, Sarah .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 2009, 598 (02) :642-649
[2]   Direct detection in Transmission Electron Microscopy with a 5 μm pitch CMOS pixel sensor [J].
Contarato, Devis ;
Denes, Peter ;
Doering, Dionisio ;
Joseph, John ;
Krieger, Brad .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 2011, 635 (01) :69-73
[3]   Single particle analysis based on Zernike phase contrast transmission electron microscopy [J].
Danev, Radostin ;
Nagayama, Kuniaki .
JOURNAL OF STRUCTURAL BIOLOGY, 2008, 161 (02) :211-218
[4]   Direct electron imaging in electron microscopy with monolithic active pixel sensors [J].
Deptuch, G. ;
Besson, A. ;
Rehak, P. ;
Szelezniak, M. ;
Wall, J. ;
Winter, M. ;
Zhu, Y. .
ULTRAMICROSCOPY, 2007, 107 (08) :674-684
[5]   The 13Å structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy [J].
Falke, S ;
Tama, F ;
Brooks, CL ;
Gogol, EP ;
Fisher, MT .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 348 (01) :219-230
[6]   Principles and prospects of direct high resolution electron image acquisition with CMOS detectors at low energies [J].
Faruqi, A. R. .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2009, 21 (31)
[7]   Cooled CCD camera with tapered fibre optics for electron microscopy [J].
Faruqi, AR ;
Andrews, HN .
NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 1997, 392 (1-3) :233-236
[8]   SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields [J].
Frank, J ;
Radermacher, M ;
Penczek, P ;
Zhu, J ;
Li, YH ;
Ladjadj, M ;
Leith, A .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :190-199
[9]   Images of paraffin monolayer crystals with perfect contrast: Minimization of beam-induced specimen motion [J].
Glaeser, R. M. ;
McMullan, G. ;
Faruqi, A. R. ;
Henderson, R. .
ULTRAMICROSCOPY, 2011, 111 (02) :90-100
[10]   Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy [J].
Grigorieff, Nikolaus ;
Harrison, Stephen C. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2011, 21 (02) :265-273