A Supervised Patch-Based Approach for Human Brain Labeling

被引:210
作者
Rousseau, Franccois [1 ]
Habas, Piotr A. [2 ]
Studholme, Colin [2 ]
机构
[1] Univ Strasbourg, CNRS, UMR 7005, LSIIT, F-67412 Illkirch Graffenstaden, France
[2] Univ Washington, Biomed Image Comp Grp, Seattle, WA 98195 USA
基金
欧洲研究理事会; 美国国家卫生研究院;
关键词
Brain magnetic resonance imaging (MRI); image segmentation; label propagation; nonlocal approach; ATLAS-BASED SEGMENTATION; MAGNETIC-RESONANCE IMAGES; AUTOMATIC SEGMENTATION; FUSION; MRI; REGISTRATION; HIPPOCAMPUS; COMBINATION; ALGORITHMS; TRANSFORM;
D O I
10.1109/TMI.2011.2156806
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We propose in this work a patch-based image labeling method relying on a label propagation framework. Based on image intensity similarities between the input image and an anatomy textbook, an original strategy which does not require any nonrigid registration is presented. Following recent developments in nonlocal image denoising, the similarity between images is represented by a weighted graph computed from an intensity-based distance between patches. Experiments on simulated and in vivo magnetic resonance images show that the proposed method is very successful in providing automated human brain labeling.
引用
收藏
页码:1852 / 1862
页数:11
相关论文
共 39 条
[21]   On combining classifiers [J].
Kittler, J ;
Hatef, M ;
Duin, RPW ;
Matas, J .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 1998, 20 (03) :226-239
[22]   Mindboggle: a scatterbrained approach to automate brain labeling [J].
Klein, A ;
Hirsch, J .
NEUROIMAGE, 2005, 24 (02) :261-280
[23]   Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration [J].
Klein, Arno ;
Andersson, Jesper ;
Ardekani, Babak A. ;
Ashburner, John ;
Avants, Brian ;
Chiang, Ming-Chang ;
Christensen, Gary E. ;
Collins, D. Louis ;
Gee, James ;
Hellier, Pierre ;
Song, Joo Hyun ;
Jenkinson, Mark ;
Lepage, Claude ;
Rueckert, Daniel ;
Thompson, Paul ;
Vercauteren, Tom ;
Woods, Roger P. ;
Mann, J. John ;
Parsey, Ramin V. .
NEUROIMAGE, 2009, 46 (03) :786-802
[24]  
Lancaster JL, 1997, HUM BRAIN MAPP, V5, P238, DOI 10.1002/(SICI)1097-0193(1997)5:4<238::AID-HBM6>3.0.CO
[25]  
2-4
[26]   Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE) [J].
Langerak, Thomas Robin ;
van der Heide, Uulke A. ;
Kotte, Alexis N. T. J. ;
Viergever, Max A. ;
van Vulpen, Marco ;
Pluim, Josien P. W. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2010, 29 (12) :2000-2008
[27]   Fast and robust multi-atlas segmentation of brain magnetic resonance images [J].
Lotjonen, Jyrki M. P. ;
Wolz, Robin ;
Koikkalainen, Juha R. ;
Thurfjell, Lennart ;
Waldemar, Gunhild ;
Soininen, Hilkka ;
Rueckert, Daniel .
NEUROIMAGE, 2010, 49 (03) :2352-2365
[28]   A non-local regularization strategy for image deconvolution [J].
Mignotte, Max .
PATTERN RECOGNITION LETTERS, 2008, 29 (16) :2206-2212
[29]   MATHEMATICAL TEXTBOOK OF DEFORMABLE NEUROANATOMIES [J].
MILLER, MI ;
CHRISTENSEN, GE ;
AMIT, Y ;
GRENANDER, U .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (24) :11944-11948
[30]  
Peyre G, 2008, LECT NOTES COMPUT SC, V5304, P57, DOI 10.1007/978-3-540-88690-7_5