共 81 条
Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
被引:204
作者:

Michalak, Pawel
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Arlington, Dept Biol, Arlington, TX 76019 USA Univ Texas Arlington, Dept Biol, Arlington, TX 76019 USA
机构:
[1] Univ Texas Arlington, Dept Biol, Arlington, TX 76019 USA
来源:
关键词:
gene expression;
genome regulation;
gene coexpression;
gene clusters;
eukaryotes;
D O I:
10.1016/j.ygeno.2007.11.002
中图分类号:
Q81 [生物工程学(生物技术)];
Q93 [微生物学];
学科分类号:
071005 ;
0836 ;
090102 ;
100705 ;
摘要:
Accumulating evidence indicates that gene order in eukaryotic genomes is not completely random and that genes with similar expression levels tend to be clustered within the same genomic neighborhoods. The mechanism behind these gene coexpression clusters is as yet unclear. In this article, plausible biochemical, genetic, evolutionary, and technological determinants of this pattern are briefly reviewed. (C) 2007 Elsevier Inc. All rights reserved.
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页码:243 / 248
页数:6
相关论文
共 81 条
[31]
A neutral model of transcriptome evolution
[J].
Khaitovich, P
;
Weiss, G
;
Lachmann, M
;
Hellmann, I
;
Enard, W
;
Muetzel, B
;
Wirkner, U
;
Ansorge, W
;
Pääbo, S
.
PLOS BIOLOGY,
2004, 2 (05)
:682-689

Khaitovich, P
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Weiss, G
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Lachmann, M
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Hellmann, I
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Enard, W
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Muetzel, B
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Wirkner, U
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Ansorge, W
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Evolut Anthropol, Leipzig, Germany

Pääbo, S
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Evolut Anthropol, Leipzig, Germany Max Planck Evolut Anthropol, Leipzig, Germany
[32]
Tandem clusters of membrane proteins in complete genome sequences
[J].
Kihara, D
;
Kanehisa, M
.
GENOME RESEARCH,
2000, 10 (06)
:731-743

Kihara, D
论文数: 0 引用数: 0
h-index: 0
机构:
Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan

Kanehisa, M
论文数: 0 引用数: 0
h-index: 0
机构:
Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan
[33]
ATP-dependent remodeling and acetylation as regulators of chromatin fluidity
[J].
Kingston, RE
;
Narlikar, GJ
.
GENES & DEVELOPMENT,
1999, 13 (18)
:2339-2352

Kingston, RE
论文数: 0 引用数: 0
h-index: 0
机构:
Massachusetts Gen Hosp, Dept Biol Mol, Boston, MA 02114 USA Massachusetts Gen Hosp, Dept Biol Mol, Boston, MA 02114 USA

Narlikar, GJ
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Dept Biol Mol, Boston, MA 02114 USA
[34]
Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome
[J].
Ko, MSH
;
Threat, TA
;
Wang, XQ
;
Horton, JH
;
Cui, YS
;
Wang, XH
;
Pryor, E
;
Paris, J
;
Wells-Smith, J
;
Kitchen, JR
;
Rowe, LB
;
Eppig, J
;
Satoh, T
;
Brant, L
;
Fujiwara, H
;
Yotsumoto, S
;
Nakashima, H
.
HUMAN MOLECULAR GENETICS,
1998, 7 (12)
:1967-1978

Ko, MSH
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Threat, TA
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Wang, XQ
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Horton, JH
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Cui, YS
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Wang, XH
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Pryor, E
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Paris, J
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Wells-Smith, J
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Kitchen, JR
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Rowe, LB
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Eppig, J
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Satoh, T
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Brant, L
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Fujiwara, H
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Yotsumoto, S
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA

Nakashima, H
论文数: 0 引用数: 0
h-index: 0
机构: Wayne State Univ, Sch Med, Ctr Mol Med & Genet, Detroit, MI 48202 USA
[35]
Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system
[J].
Koyanagi, KO
;
Hagiwara, M
;
Itoh, T
;
Gojobori, T
;
Imanishi, T
.
GENE,
2005, 353 (02)
:169-176

Koyanagi, KO
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan

Hagiwara, M
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan

Itoh, T
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan

Gojobori, T
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan

Imanishi, T
论文数: 0 引用数: 0
h-index: 0
机构: Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan
[36]
Initiation of translation in prokaryotes and eukaryotes
[J].
Kozak, M
.
GENE,
1999, 234 (02)
:187-208

Kozak, M
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Med & Dent New Jersey, Dept Biochem, Piscataway, NJ 08854 USA Univ Med & Dent New Jersey, Dept Biochem, Piscataway, NJ 08854 USA
[37]
Regulation of adjacent yeast genes
[J].
Kruglyak, S
;
Tang, HX
.
TRENDS IN GENETICS,
2000, 16 (03)
:109-111

Kruglyak, S
论文数: 0 引用数: 0
h-index: 0
机构:
Univ So Calif, Dept Math, Los Angeles, CA 90089 USA Univ So Calif, Dept Math, Los Angeles, CA 90089 USA

Tang, HX
论文数: 0 引用数: 0
h-index: 0
机构:
Univ So Calif, Dept Math, Los Angeles, CA 90089 USA Univ So Calif, Dept Math, Los Angeles, CA 90089 USA
[38]
Gene context conservation of a higher order than operons
[J].
Lathe, WC
;
Snel, B
;
Bork, P
.
TRENDS IN BIOCHEMICAL SCIENCES,
2000, 25 (10)
:474-479

Lathe, WC
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69012 Heidelberg, Germany

Snel, B
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69012 Heidelberg, Germany

Bork, P
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69012 Heidelberg, Germany
[39]
Genomic gene clustering analysis of pathways in eukaryotes
[J].
Lee, JM
;
Sonnhammer, ELL
.
GENOME RESEARCH,
2003, 13 (05)
:875-882

Lee, JM
论文数: 0 引用数: 0
h-index: 0
机构:
Karolinska Inst, Ctr Genom & Bioinformat, S-17177 Stockholm, Sweden Karolinska Inst, Ctr Genom & Bioinformat, S-17177 Stockholm, Sweden

Sonnhammer, ELL
论文数: 0 引用数: 0
h-index: 0
机构:
Karolinska Inst, Ctr Genom & Bioinformat, S-17177 Stockholm, Sweden Karolinska Inst, Ctr Genom & Bioinformat, S-17177 Stockholm, Sweden
[40]
EXPRESSION OF GROWTH-DIFFERENTIATION FACTOR-I IN THE NERVOUS-SYSTEM - CONSERVATION OF A BICISTRONIC STRUCTURE
[J].
LEE, SJ
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1991, 88 (10)
:4250-4254

LEE, SJ
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Institution of Washington, Department of Embryology, Baltimore, MD 21210