On population-based simulation for static inference

被引:113
作者
Jasra, Ajay
Stephens, David A.
Holmes, Christopher C.
机构
[1] Univ London Imperial Coll Sci Technol & Med, Dept Math, London SW7 2AZ, England
[2] McGill Univ, Dept Math & Stat, Montreal, PQ H3A 2K6, Canada
[3] Univ Oxford, Dept Stat, Oxford OX1 3TG, England
基金
英国医学研究理事会;
关键词
Markov chain Monte Carlo; sequential Monte Carlo; Bayesian mixture models; adaptive methods;
D O I
10.1007/s11222-007-9028-9
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
In this paper we present a review of population-based simulation for static inference problems. Such methods can be described as generating a collection of random variables {X-n} (n=1,...,N) in parallel in order to simulate from some target density pi (or potentially sequence of target densities). Population-based simulation is important as many challenging sampling problems in applied statistics cannot be dealt with successfully by conventional Markov chain Monte Carlo (MCMC) methods. We summarize population-based MCMC (Geyer, Computing Science and Statistics: The 23rd Symposium on the Interface, pp. 156-163, 1991; Liang and Wong, J. Am. Stat. Assoc. 96, 653-666, 2001) and sequential Monte Carlo samplers (SMC) (Del Moral, Doucet and Jasra, J. Roy. Stat. Soc. Ser. B 68, 411-436, 2006a), providing a comparison of the approaches. We give numerical examples from Bayesian mixture modelling (Richardson and Green, J. Roy. Stat. Soc. Ser. B 59, 731-792, 1997).
引用
收藏
页码:263 / 279
页数:17
相关论文
共 80 条
[61]   A SLOWLY MIXING MARKOV-CHAIN WITH IMPLICATIONS FOR GIBBS SAMPLING [J].
MATTHEWS, P .
STATISTICS & PROBABILITY LETTERS, 1993, 17 (03) :231-236
[62]  
MCLACHLAN G, 2000, WILEY SER PROB STAT, P1, DOI 10.1002/0471721182
[63]   EQUATION OF STATE CALCULATIONS BY FAST COMPUTING MACHINES [J].
METROPOLIS, N ;
ROSENBLUTH, AW ;
ROSENBLUTH, MN ;
TELLER, AH ;
TELLER, E .
JOURNAL OF CHEMICAL PHYSICS, 1953, 21 (06) :1087-1092
[64]   Replica-exchange multicanonical and multicanonical replica-exchange Monte Carlo simulations of peptides. I. Formulation and benchmark test [J].
Mitsutake, A ;
Sugita, Y ;
Okamoto, Y .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (14) :6664-6675
[65]   Sampling from multimodal distributions using tempered transitions [J].
Neal, RM .
STATISTICS AND COMPUTING, 1996, 6 (04) :353-366
[66]   Annealed importance sampling [J].
Neal, RM .
STATISTICS AND COMPUTING, 2001, 11 (02) :125-139
[67]  
Pritchard JK, 2000, GENETICS, V155, P945
[68]   On Bayesian analysis of mixtures with an unknown number of components [J].
Richardson, S ;
Green, PJ .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-METHODOLOGICAL, 1997, 59 (04) :731-758
[69]   Bayesian inference in hidden Markov models through the reversible jump Markov chain Monte Carlo method [J].
Robert, CP ;
Rydén, T ;
Titterington, DM .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 2000, 62 :57-75
[70]  
ROBERT CP, 2004, MONET CARLO STAT MET