Mass-spectrometric exploration of proteome structure and function

被引:1605
作者
Aebersold, Ruedi [1 ,2 ]
Mann, Matthias [3 ,4 ]
机构
[1] Swiss Fed Inst Technol, Inst Mol Syst Biol, Dept Biol, CH-8093 Zurich, Switzerland
[2] Univ Zurich, Fac Sci, CH-8093 Zurich, Switzerland
[3] Max Planck Inst Biochem, Dept Prote & Signal Transduct, D-82152 Martinsried, Germany
[4] Univ Copenhagen, Fac Hlth & Med Sci, Novo Nordisk Fdn Ctr Prot Res, DK-2200 Copenhagen, Denmark
关键词
CHEMICAL CROSS-LINKING; PHOSPHOPROTEOME REVEALS; QUANTITATIVE-ANALYSIS; LYSINE ACETYLATION; HIGH-RESOLUTION; LIVING CELLS; COPY-NUMBER; DRAFT MAP; IN-VIVO; PEPTIDE;
D O I
10.1038/nature19949
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
Numerous biological processes are concurrently and coordinately active in every living cell. Each of them encompasses synthetic, catalytic and regulatory functions that are, almost always, carried out by proteins organized further into higher-order structures and networks. For decades, the structures and functions of selected proteins have been studied using biochemical and biophysical methods. However, the properties and behaviour of the proteome as an integrated system have largely remained elusive. Powerful mass-spectrometry-based technologies now provide unprecedented insights into the composition, structure, function and control of the proteome, shedding light on complex biological processes and phenotypes.
引用
收藏
页码:347 / 355
页数:9
相关论文
共 120 条
[41]
Global, quantitative and dynamic mapping of protein subcellular localization [J].
Itzhak, Daniel N. ;
Tyanova, Stefka ;
Cox, Juergen ;
Borner, Georg H. H. .
ELIFE, 2016, 5
[42]
The Structural Basis of Substrate Recognition by the Eukaryotic Chaperonin TRiC/CCT [J].
Joachimiak, Lukasz A. ;
Walzthoeni, Thomas ;
Liu, Corey W. ;
Aebersold, Ruedi ;
Frydman, Judith .
CELL, 2014, 159 (05) :1042-1055
[43]
Proteome-wide Identification of Poly(ADP-Ribosyl)ation Targets in Different Genotoxic Stress Responses [J].
Jungmichel, Stephanie ;
Rosenthal, Florian ;
Altmeyer, Matthias ;
Lukas, Jiri ;
Hottiger, Michael O. ;
Nielsen, Michael L. .
MOLECULAR CELL, 2013, 52 (02) :272-285
[44]
Accurate Protein Complex Retrieval by Affinity Enrichment Mass Spectrometry (AE-MS) Rather than Affinity Purification Mass Spectrometry (AP-MS) [J].
Keilhauer, Eva C. ;
Hein, Marco Y. ;
Mann, Matthias .
MOLECULAR & CELLULAR PROTEOMICS, 2015, 14 (01) :120-135
[45]
A draft map of the human proteome [J].
Kim, Min-Sik ;
Pinto, Sneha M. ;
Getnet, Derese ;
Nirujogi, Raja Sekhar ;
Manda, Srikanth S. ;
Chaerkady, Raghothama ;
Madugundu, Anil K. ;
Kelkar, Dhanashree S. ;
Isserlin, Ruth ;
Jain, Shobhit ;
Thomas, Joji K. ;
Muthusamy, Babylakshmi ;
Leal-Rojas, Pamela ;
Kumar, Praveen ;
Sahasrabuddhe, Nandini A. ;
Balakrishnan, Lavanya ;
Advani, Jayshree ;
George, Bijesh ;
Renuse, Santosh ;
Selvan, Lakshmi Dhevi N. ;
Patil, Arun H. ;
Nanjappa, Vishalakshi ;
Radhakrishnan, Aneesha ;
Prasad, Samarjeet ;
Subbannayya, Tejaswini ;
Raju, Rajesh ;
Kumar, Manish ;
Sreenivasamurthy, Sreelakshmi K. ;
Marimuthu, Arivusudar ;
Sathe, Gajanan J. ;
Chavan, Sandip ;
Datta, Keshava K. ;
Subbannayya, Yashwanth ;
Sahu, Apeksha ;
Yelamanchi, Soujanya D. ;
Jayaram, Savita ;
Rajagopalan, Pavithra ;
Sharma, Jyoti ;
Murthy, Krishna R. ;
Syed, Nazia ;
Goel, Renu ;
Khan, Aafaque A. ;
Ahmad, Sartaj ;
Dey, Gourav ;
Mudgal, Keshav ;
Chatterjee, Aditi ;
Huang, Tai-Chung ;
Zhong, Jun ;
Wu, Xinyan ;
Shaw, Patrick G. .
NATURE, 2014, 509 (7502) :575-+
[46]
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates [J].
Kleifeld, Oded ;
Doucet, Alain ;
Prudova, Anna ;
Keller, Ulrich Auf Dem ;
Gioia, Magda ;
Kizhakkedathu, Jayachandran N. ;
Overall, Christopher M. .
NATURE PROTOCOLS, 2011, 6 (10) :1578-1611
[47]
Kramer K, 2014, NAT METHODS, V11, P1064, DOI [10.1038/NMETH.3092, 10.1038/nmeth.3092]
[48]
A high-throughput approach for measuring temporal changes in the interactome [J].
Kristensen, Anders R. ;
Gsponer, Joerg ;
Foster, Leonard J. .
NATURE METHODS, 2012, 9 (09) :907-+
[49]
Kulak NA, 2014, NAT METHODS, V11, P319, DOI [10.1038/nmeth.2834, 10.1038/NMETH.2834]
[50]
Multidimensional proteomics for cell biology [J].
Larance, Mark ;
Lomond, Angus I. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2015, 16 (05) :269-280