Deoxyribozymes:: useful DNA catalysts in vitro and in vivo

被引:195
作者
Baum, D. A. [1 ]
Silverman, S. K. [1 ]
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
关键词
deoxyribozyme; DNA enzyme; DNAzyme; RNA cleavage; RNA ligation; in vitro selection; in vivo therapeutic agents;
D O I
10.1007/s00018-008-8029-y
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
Deoxyribozymes (DNA enzymes; DNAzymes) are catalytic DNA sequences. Using the technique of in vitro selection, individual deoxyribozymes have been identified that catalyze RNA cleavage, RNA ligation, and a growing range of other chemical reactions. DNA enzymes have been used in vitro for applications such as biochemical RNA manipulation and analytical assays for metal ions, small organic compounds, oligonucleotides, and proteins. Deoxyribozymes have also been utilized as in vivo therapeutic agents to destroy specific mRNA targets. Although many conceptual and practical challenges remain to be addressed, deoxyribozymes have substantial promise to contribute meaningfully for applications both in vitro and in vivo.
引用
收藏
页码:2156 / 2174
页数:19
相关论文
共 222 条
[1]
Hairpin DNAzymes: a new toot for efficient cellular gene silencing [J].
Abdelgany, Amr ;
Wood, Matthew ;
Beeson, David .
JOURNAL OF GENE MEDICINE, 2007, 9 (08) :727-738
[2]
Structure-switching allosteric deoxyribozymes [J].
Achenbach, JC ;
Nutiu, R ;
Li, YF .
ANALYTICA CHIMICA ACTA, 2005, 534 (01) :41-51
[3]
DNAzymes:: From creation in vitro to application in vivo [J].
Achenbach, JC ;
Chiuman, W ;
Cruz, RPG ;
Li, Y .
CURRENT PHARMACEUTICAL BIOTECHNOLOGY, 2004, 5 (04) :321-336
[4]
DNAzyme-mediated silencing of ornithine decarboxylase [J].
Ackermann, JM ;
Kanugula, S ;
Pegg, AE .
BIOCHEMISTRY, 2005, 44 (06) :2143-2152
[5]
Enhancement of RNA cleavage activity of 10-23 DNAzyme by covalently introduced intercalator [J].
Asanuma, Hiroyuki ;
Hayashi, Hiroyuki ;
Zhao, Jing ;
Liang, Xingguo ;
Yamazawa, Akira ;
Kuramochi, Takeshi ;
Matsunaga, Daijiro ;
Aiba, Yuichiro ;
Kashida, Hiromu ;
Komiyama, Makoto .
CHEMICAL COMMUNICATIONS, 2006, (48) :5062-5064
[6]
REGIOSELECTIVE LIGATION OF OLIGORIBONUCLEOTIDES USING DNA SPLINTS [J].
BAIN, JD ;
SWITZER, C .
NUCLEIC ACIDS RESEARCH, 1992, 20 (16) :4372-4372
[7]
Deoxyribozyme-catalyzed labeling of RNA [J].
Baum, Dana A. ;
Silverman, Scott K. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (19) :3502-3504
[8]
DNAzymes targeting the transcription factor Egr-1 reduce myocardial infarct size following ischemia-reperfusion in rats [J].
Bhindi, R. ;
Khachigian, L. M. ;
Lowe, H. C. .
JOURNAL OF THROMBOSIS AND HAEMOSTASIS, 2006, 4 (07) :1479-1483
[9]
SELECTION OF SINGLE-STRANDED-DNA MOLECULES THAT BIND AND INHIBIT HUMAN THROMBIN [J].
BOCK, LC ;
GRIFFIN, LC ;
LATHAM, JA ;
VERMAAS, EH ;
TOOLE, JJ .
NATURE, 1992, 355 (6360) :564-566
[10]
Breaker R R, 1994, Chem Biol, V1, P223, DOI 10.1016/1074-5521(94)90014-0