The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

被引：1667

作者：

Lamesch, Philippe ^{[1
]}

Berardini, Tanya Z. ^{[1
]}

Li, Donghui ^{[1
]}

Swarbreck, David ^{[1
]}

Wilks, Christopher ^{[1
]}

Sasidharan, Rajkumar ^{[1
]}

Muller, Robert ^{[1
]}

Dreher, Kate ^{[1
]}

Alexander, Debbie L. ^{[1
]}

Garcia-Hernandez, Margarita ^{[1
]}

Karthikeyan, Athikkattuvalasu S. ^{[1
]}

Lee, Cynthia H. ^{[1
]}

Nelson, William D. ^{[1
]}

Ploetz, Larry ^{[1
]}

Singh, Shanker ^{[1
]}

Wensel, April ^{[1
]}

Huala, Eva ^{[1
]}

机构：

[1] Carnegie Inst, Dept Plant Biol, Stanford, CA 94305 USA

来源：

NUCLEIC ACIDS RESEARCH | 2012年 / 40卷 / D1期

基金：

美国国家科学基金会; 英国生物技术与生命科学研究理事会; 美国国家卫生研究院;

关键词：

GENOME; THALIANA; MODEL; RNA; PLANT; IDENTIFICATION; TRANSCRIPTS; DATABASE;

D O I：

10.1093/nar/gkr1090

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Arabidopsis Information Resource (TAIR, http://arabidopsis.org) is a genome database for Arabidopsis thaliana, an important reference organism for many fundamental aspects of biology as well as basic and applied plant biology research. TAIR serves as a central access point for Arabidopsis data, annotates gene function and expression patterns using controlled vocabulary terms, and maintains and updates the A. thaliana genome assembly and annotation. TAIR also provides researchers with an extensive set of visualization and analysis tools. Recent developments include several new genome releases (TAIR8, TAIR9 and TAIR10) in which the A. thaliana assembly was updated, pseudogenes and transposon genes were re-annotated, and new data from proteomics and next generation transcriptome sequencing were incorporated into gene models and splice variants. Other highlights include progress on functional annotation of the genome and the release of several new tools including Textpresso for Arabidopsis which provides the capability to carry out full text searches on a large body of research literature.

引用

页码：D1202 / D1210

页数：9

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