A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development

被引:79
作者
He, Xin-Jian [1 ,2 ]
Hsu, Yi-Feng [1 ,2 ,3 ]
Zhu, Shihua [4 ]
Liu, Hai-Liang [1 ,2 ]
Pontes, Olga [5 ]
Zhu, Jianhua [6 ]
Cui, Xinping [7 ]
Wang, Co-Shine [3 ]
Zhu, Jian-Kang [1 ,2 ]
机构
[1] Univ Calif Riverside, Inst Integrat Genome Biol, Riverside, CA 92521 USA
[2] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
[3] Natl Chung Hsing Univ, Grad Inst Biotechnol, Taichung 40227, Taiwan
[4] Ningbo Univ, Coll Sci & Technol, Ningbo 315211, Zhejiang, Peoples R China
[5] Washington Univ, Dept Biol, St Louis, MO 63130 USA
[6] Univ Maryland, Dept Plant Sci & Landscape Architecture, College Pk, MD 20742 USA
[7] Univ Calif Riverside, Dept Stat, Riverside, CA 92521 USA
基金
美国国家卫生研究院;
关键词
RDM4; siRNA; transcriptional gene silencing; Pol II; Pol V; POLYMERASE-II; ARABIDOPSIS-THALIANA; POL-IV; PROTEIN; GLYCOSYLASE/LYASE; PATHWAYS; SUBUNIT; ROS1;
D O I
10.1101/gad.1851809
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
RNA-directed DNA methylation (RdDM) is a conserved mechanism for epigenetic silencing of transposons and other repetitive elements. We report that the rdm4 (RNA-directed DNA Methylation4) mutation not only impairs RdDM, but also causes pleiotropic developmental defects in Arabidopsis. Both RNA polymerase II (Pol II)- and Pol V-dependent transcripts are affected in the rdm4 mutant. RDM4 encodes a novel protein that is conserved from yeast to humans and interacts with Pol II and Pol V in plants. Our results suggest that RDM4 functions in epigenetic regulation and plant development by serving as a transcriptional regulator for RNA Pol V and Pol II, respectively.
引用
收藏
页码:2717 / 2722
页数:6
相关论文
共 25 条
[1]   Gardening the genome:: DNA methylation in Arabidopsis thaliana [J].
Chan, SWL ;
Henderson, IR ;
Jacobsen, SE .
NATURE REVIEWS GENETICS, 2005, 6 (05) :351-360
[2]   Multisubunit RNA polymerases [J].
Cramer, P .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2002, 12 (01) :89-97
[3]   Proteome survey reveals modularity of the yeast cell machinery [J].
Gavin, AC ;
Aloy, P ;
Grandi, P ;
Krause, R ;
Boesche, M ;
Marzioch, M ;
Rau, C ;
Jensen, LJ ;
Bastuck, S ;
Dümpelfeld, B ;
Edelmann, A ;
Heurtier, MA ;
Hoffman, V ;
Hoefert, C ;
Klein, K ;
Hudak, M ;
Michon, AM ;
Schelder, M ;
Schirle, M ;
Remor, M ;
Rudi, T ;
Hooper, S ;
Bauer, A ;
Bouwmeester, T ;
Casari, G ;
Drewes, G ;
Neubauer, G ;
Rick, JM ;
Kuster, B ;
Bork, P ;
Russell, RB ;
Superti-Furga, G .
NATURE, 2006, 440 (7084) :631-636
[4]   ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase [J].
Gong, ZH ;
Morales-Ruiz, T ;
Ariza, RR ;
Roldán-Arjona, T ;
David, L ;
Zhu, JK .
CELL, 2002, 111 (06) :803-814
[5]   An Effector of RNA-Directed DNA Methylation in Arabidopsis Is an ARGONAUTE 4-and RNA-Binding Protein [J].
He, Xin-Jian ;
Hsu, Yi-Feng ;
Zhu, Shihua ;
Wierzbicki, Andrzej T. ;
Pontes, Olga ;
Pikaard, Craig S. ;
Liu, Hai-Liang ;
Wang, Co-Shine ;
Jin, Hailing ;
Zhu, Jian-Kang .
CELL, 2009, 137 (03) :498-508
[6]   NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation [J].
He, Xin-Jian ;
Hsu, Yi-Feng ;
Pontes, Olga ;
Zhu, Jianhua ;
Lu, Jian ;
Bressan, Ray A. ;
Pikaard, Craig ;
Wang, Co-Shine ;
Zhu, Jian-Kang .
GENES & DEVELOPMENT, 2009, 23 (03) :318-330
[7]   An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II [J].
Huang, Linfeng ;
Jones, Alexandra M. E. ;
Searle, Iain ;
Patel, Kanu ;
Vogler, Hannes ;
Hubner, Nina C. ;
Baulcombe, David C. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (01) :91-93
[8]   Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis [J].
Huettel, Bruno ;
Kanno, Tatsuo ;
Daxinger, Lucia ;
Aufsatz, Werner ;
Matzke, Antonius J. M. ;
Matzke, Marjori .
EMBO JOURNAL, 2006, 25 (12) :2828-2836
[9]   Exploration, normalization, and summaries of high density oligonucleotide array probe level data [J].
Irizarry, RA ;
Hobbs, B ;
Collin, F ;
Beazer-Barclay, YD ;
Antonellis, KJ ;
Scherf, U ;
Speed, TP .
BIOSTATISTICS, 2003, 4 (02) :249-264
[10]   Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: Interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways [J].
Ishitani, M ;
Xiong, LM ;
Stevenson, B ;
Zhu, JK .
PLANT CELL, 1997, 9 (11) :1935-1949