An Effector of RNA-Directed DNA Methylation in Arabidopsis Is an ARGONAUTE 4-and RNA-Binding Protein

被引:208
作者
He, Xin-Jian [1 ,2 ]
Hsu, Yi-Feng [1 ,2 ,4 ]
Zhu, Shihua [1 ,2 ,5 ]
Wierzbicki, Andrzej T. [6 ]
Pontes, Olga [6 ]
Pikaard, Craig S. [6 ]
Liu, Hai-Liang [1 ,2 ]
Wang, Co-Shine [4 ]
Jin, Hailing [1 ,3 ]
Zhu, Jian-Kang [1 ,2 ]
机构
[1] Univ Calif Riverside, Inst Integrat Genome Biol, Riverside, CA 92521 USA
[2] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
[3] Univ Calif Riverside, Dept Plant Pathol, Riverside, CA 92521 USA
[4] Natl Chung Hsing Univ, Grad Inst Biotechnol, Taichung 40227, Taiwan
[5] Ningbo Univ, Coll Sci & Technol, Ningbo 315211, Zhejiang, Peoples R China
[6] Washington Univ, Dept Biol, St Louis, MO 63130 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
GLYCOSYLASE/LYASE ROS1; POLYMERASE-II; TRANSCRIPTION; HETEROCHROMATIN; ROLES; SPT5; IV; MAINTENANCE; SUBUNIT; RITS;
D O I
10.1016/j.cell.2009.04.028
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA methylation is a conserved epigenetic mark in plants and mammals. In Arabidopsis, DNA methylation can be triggered by small interfering RNAs (siRNAs) through an RNA-directed DNA methylation (RdDM) pathway. Here, we report the identification of an RdDM effector, KTF1. Loss-of-function mutations in KTF1 reduce DNA methylation and release the silencing of RdDM target loci without abolishing the siRNA triggers. KTF1 has similarity to the transcription elongation factor SPT5 and contains a C-terminal extension rich in GW/WG repeats. KTF1 colocalizes with ARGONAUTE 4 (AGO4) in punctate nuclear foci and binds AGO4 and RNA transcripts. Our results suggest KTF1 as an adaptor protein that binds scaffold transcripts generated by Pol V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex. The dual interaction of an effector protein with AGO and small RNA target transcripts may be a general feature of RNA-silencing effector complexes.
引用
收藏
页码:498 / 508
页数:11
相关论文
共 43 条
[1]   Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation [J].
Agius, Fernanda ;
Kapoor, Avnish ;
Zhu, Jian-Kang .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (31) :11796-11801
[2]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[3]   Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing [J].
Buhler, Marc ;
Verdel, André ;
Moazed, Danesh .
CELL, 2006, 125 (05) :873-886
[4]   Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing [J].
Cao, XF ;
Jacobsen, SE .
CURRENT BIOLOGY, 2002, 12 (13) :1138-1144
[5]   Gardening the genome:: DNA methylation in Arabidopsis thaliana [J].
Chan, SWL ;
Henderson, IR ;
Jacobsen, SE .
NATURE REVIEWS GENETICS, 2005, 6 (05) :351-360
[6]   Cell cycle control of centromeric repeat transcription and heterochromatin assembly [J].
Chen, Ee Sin ;
Zhang, Ke ;
Nicolas, Estelle ;
Cam, Hugh P. ;
Zofall, Martin ;
Grewal, Shiv I. S. .
NATURE, 2008, 451 (7179) :734-737
[7]   GW182 family proteins are crucial for microRNA-mediated gene silencing [J].
Ding, Lei ;
Han, Min .
TRENDS IN CELL BIOLOGY, 2007, 17 (08) :411-416
[8]   Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components [J].
El-Shami, Mahmoud ;
Pontier, Dominique ;
Lahmy, Sylvie ;
Braun, Laurence ;
Picart, Claire ;
Vega, Danielle ;
Hakimi, Mohamed-Ali ;
Jacobsen, Steven E. ;
Cooke, Richard ;
Lagrange, Thierry .
GENES & DEVELOPMENT, 2007, 21 (20) :2539-2544
[9]   GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay [J].
Eulalio, Ana ;
Huntzinger, Eric ;
Izaurralde, Elisa .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2008, 15 (04) :346-353
[10]   RNAi: The nuts and bolts of the RISC machine [J].
Filipowicz, W .
CELL, 2005, 122 (01) :17-20