Identification of trace element - Containing proteins in genomic databases

被引:40
作者
Gladyshev, VN [1 ]
Kryukov, GV
Fomenko, DE
Hatfield, DL
机构
[1] Univ Nebraska, Dept Biochem, Lincoln, NE 68588 USA
[2] NCI, Canc Res Ctr, Lab Canc Prevent, Sect Mol Biol Selenium,NIH, Bethesda, MD 20892 USA
关键词
bioinformatics; metal-containing proteins; selenium; selenoprotein; selenoproteome;
D O I
10.1146/annurev.nutr.24.012003.132241
中图分类号
R15 [营养卫生、食品卫生]; TS201 [基础科学];
学科分类号
100403 ;
摘要
Development of bioinformatics tools provided researchers with the ability to identify full sets of trace element-containing proteins in organisms for which complete genomic sequences are available. Recently, independent bioinformatics methods were used to identify all, or almost all, genes encoding selenocysteine-containing proteins in human, mouse, and Drosophila genomes, characterizing entire selenoproteomes in these organisms. It also should be possible to search for entire sets of other trace element-associated proteins, such as metal-containing proteins, although methods for their identification are still in development.
引用
收藏
页码:579 / 596
页数:20
相关论文
共 74 条
[1]   PRINTS and its automatic supplement, prePRINTS [J].
Attwood, TK ;
Bradley, P ;
Flower, DR ;
Gaulton, A ;
Maudling, N ;
Mitchell, AL ;
Moulton, G ;
Nordle, A ;
Paine, K ;
Taylor, P ;
Uddin, A ;
Zygouri, C .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :400-402
[2]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkr1065, 10.1093/nar/gkh121]
[3]   SUBSTITUTION OF CYSTEINE FOR SELENOCYSTEINE IN TYPE-I IODOTHYRONINE DEIODINASE REDUCES THE CATALYTIC EFFICIENCY OF THE PROTEIN BUT ENHANCES ITS TRANSLATION [J].
BERRY, MJ ;
MAIA, AL ;
KIEFFER, JD ;
HARNEY, JW ;
LARSEN, PR .
ENDOCRINOLOGY, 1992, 131 (04) :1848-1852
[4]   RECOGNITION OF UGA AS A SELENOCYSTEINE CODON IN TYPE-I DEIODINASE REQUIRES SEQUENCES IN THE 3' UNTRANSLATED REGION [J].
BERRY, MJ ;
BANU, L ;
CHEN, Y ;
MANDEL, SJ ;
KIEFFER, JD ;
HARNEY, JW ;
LARSEN, PR .
NATURE, 1991, 353 (6341) :273-276
[5]  
Bock A, 2000, Biofactors, V11, P77
[6]   SELENOPROTEIN SYNTHESIS - AN EXPANSION OF THE GENETIC-CODE [J].
BOCK, A ;
FORCHHAMMER, K ;
HEIDER, J ;
BARON, C .
TRENDS IN BIOCHEMICAL SCIENCES, 1991, 16 (12) :463-467
[7]   Early embryonic lethality caused by targeted disruption of the mouse selenocysteine tRNA gene (Trsp) [J].
Bosl, MR ;
Takaku, K ;
Oshima, M ;
Nishimura, S ;
Taketo, MM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (11) :5531-5534
[8]   A flexible motif search technique based on generalized profiles [J].
Bucher, P ;
Karplus, K ;
Moeri, N ;
Hofmann, K .
COMPUTERS & CHEMISTRY, 1996, 20 (01) :3-23
[9]  
BUCHER P, 1994, P 2 INT C INT SYST M
[10]   MDB: The metalloprotein database and browser at the scripps research institute [J].
Castagnetto, JM ;
Hennessy, SW ;
Roberts, VA ;
Getzoff, ED ;
Tainer, JA ;
Pique, ME .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :379-382