Importing ArrayExpress datasets into R/Bioconductor

被引：117

作者：

Kauffmann, Audrey ^{[1
]}

Rayner, Tim F. ^{[2
]}

Parkinson, Helen ^{[1
]}

Kapushesky, Misha ^{[1
]}

Lukk, Margus ^{[1
]}

Brazma, Alvis ^{[1
]}

Huber, Wolfgang ^{[1
]}

机构：

[1] EBI, EMBL, Cambridge CB10 1SD, England

[2] Addenbrookes Hosp, Cambridge Inst Med Res, Cambridge CB2 0XY, England

来源：

BIOINFORMATICS | 2009年 / 25卷 / 16期

基金：

美国国家卫生研究院;

关键词：

MICROARRAY DATA; BIOCONDUCTOR; FORMAT; MIAME;

D O I：

10.1093/bioinformatics/btp354

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

ArrayExpress is one of the largest public repositories of microarray datasets. R/Bioconductor provides a comprehensive suite of microarray analysis and integrative bioinformatics software. However, easy ways for importing datasets from ArrayExpress into R/Bioconductor have been lacking. Here, we present such a tool that is suitable for both interactive and automated use.

引用

页码：2092 / 2094

页数：3

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