Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences

被引：11

作者：

Lanave, C

Liuni, S

Licciulli, F

Attimonelli, M

机构：

[1] CNR, Ctr Studio Mitocondri & Metab Energet, I-70126 Bari, Italy

[2] CNR, Area Ric, I-70126 Bari, Italy

[3] Univ Bari, Dipartmento Biochim & Biol Mol, I-70126 Bari, Italy

来源：

NUCLEIC ACIDS RESEARCH | 2000年 / 28卷 / 01期

关键词：

D O I：

10.1093/nar/28.1.153

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The AMmtDB database (http://bio-www.ba.cnr,it:8000/srs6/) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for:proteins and tRNAs, The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and amino acid multi-alignments are provided. AMmtDB data selected through SRS can be viewed and managed using:GeneDoc or other programs for the management of multi-aligned data depending on the user's operative system. The multiple alignments have been produced with CLUSTALW and PILEUP programs and then carefully optimized manually.

引用

页码：153 / 154

页数：2

共 15 条

[1] MitBASE: a comprehensive and integrated mitochondrial DNA database. The present status [J].

Attimonelli, M ;

Altamura, N ;

Benne, R ;

Brennicke, A ;

Cooper, JM ;

D'Elia, D ;

de Montalvo, A ;

de Pinto, B ;

De Robertis, M ;

Golik, P ;

Knoop, V ;

Lanave, C ;

Lazowska, J ;

Licciulli, F ;

Malladi, BS ;

Memeo, F ;

Monnerot, M ;

Pasimeni, R ;

Pilbout, S ;

Schapira, AHV ;

Sloof, P ;

Saccone, C .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :148-152

[2] MitBASE: a comprehensive and integrated mitochondrial DNA database [J].

Attimonelli, M ;

Altamura, N ;

Benne, R ;

Boyen, C ;

Brennicke, A ;

Carone, A ;

Cooper, JM ;

D'Elia, D ;

de Montalvo, A ;

de Pinto, B ;

De Robertis, M ;

Golik, P ;

Grienenberger, JM ;

Knoop, V ;

Lanave, C ;

Lazowska, J ;

Lemagnen, A ;

Malladi, BS ;

Memeo, F ;

Monnerot, M ;

Pilbout, S ;

Schapira, AHV ;

Sloof, P ;

Slonimski, P ;

Stevens, K ;

Saccone, C .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :128-133

[3] The EMBL Nucleotide Sequence Database [J].

Baker, W ;

van den Broek, A ;

Camon, E ;

Hingamp, P ;

Sterk, P ;

Stoesser, G ;

Tuli, MA .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :19-23

[4] GenBank [J].

Benson, DA ;

Boguski, MS ;

Lipman, DJ ;

Ostell, J ;

Ouellette, BFF ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :12-17

[5] GenBank [J].

Benson, DA ;

Karsch-Mizrachi, I ;

Lipman, DJ ;

Ostell, J ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :15-18

[6] A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].

DEVEREUX, J ;

HAEBERLI, P ;

SMITHIES, O .

NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395

[7]

Etzold T, 1996, METHOD ENZYMOL, V266, P114

[8]

Galtier N, 1996, COMPUT APPL BIOSCI, V12, P543

[9]

GOUY M, 1985, COMPUT APPL BIOSCI, V1, P167

[10]

HIGGINS DG, 1992, COMPUT APPL BIOSCI, V8, P189

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