NONNEGATIVE MATRIX FACTORIZATION;
DATA SETS;
METABONOMICS;
SYSTEMS;
D O I:
10.1093/bioinformatics/btl428
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
The increasing role of metabolomics in system biology is driving the development of tools for comprehensive analysis of high-resolution NMR spectral datasets. This task is quite challenging since unlike the datasets resulting from other 'omics', a substantial preprocessing of the data is needed to allow successful identification of spectral patterns associated with relevant biological variability. HiRes is a unique stand-alone software tool that combines standard NMR spectral processing functionalities with techniques for multi-spectral dataset analysis, such as principal component analysis and non-negative matrix factorization. In addition, HiRes contains extensive abilities for data cleansing, such as baseline correction, solvent peak suppression, removal of frequency shifts owing to experimental conditions as well as auxiliary information management. Integration of these components together with multivariate analytical procedures makes HiRes very capable of addressing the challenges for assessment and interpretation of large metabolomic datasets, greatly simplifying this otherwise lengthy and difficult process and assuring optimal information retrieval.
机构:
Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, EnglandUniv London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
Nicholson, JK
;
Lindon, JC
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h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, EnglandUniv London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
Lindon, JC
;
Holmes, E
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, EnglandUniv London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
机构:
Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, EnglandUniv London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
Nicholson, JK
;
Lindon, JC
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, EnglandUniv London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
Lindon, JC
;
Holmes, E
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, EnglandUniv London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England