HiRes - a tool for comprehensive assessment and interpretation of metabolomic data

被引:24
作者
Zhao, Qi
Stoyanova, Radka
Du, Shuyan
Sajda, Paul
Brown, Truman R. [1 ]
机构
[1] Columbia Univ, Dept Radiol, Hatch Ctr MR Res, New York, NY 10032 USA
[2] Fox Chase Canc Ctr, Dept Radiat Oncol, Philadelphia, PA 19111 USA
[3] Columbia Univ, Dept Biomed Engn, New York, NY 10027 USA
关键词
NONNEGATIVE MATRIX FACTORIZATION; DATA SETS; METABONOMICS; SYSTEMS;
D O I
10.1093/bioinformatics/btl428
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The increasing role of metabolomics in system biology is driving the development of tools for comprehensive analysis of high-resolution NMR spectral datasets. This task is quite challenging since unlike the datasets resulting from other 'omics', a substantial preprocessing of the data is needed to allow successful identification of spectral patterns associated with relevant biological variability. HiRes is a unique stand-alone software tool that combines standard NMR spectral processing functionalities with techniques for multi-spectral dataset analysis, such as principal component analysis and non-negative matrix factorization. In addition, HiRes contains extensive abilities for data cleansing, such as baseline correction, solvent peak suppression, removal of frequency shifts owing to experimental conditions as well as auxiliary information management. Integration of these components together with multivariate analytical procedures makes HiRes very capable of addressing the challenges for assessment and interpretation of large metabolomic datasets, greatly simplifying this otherwise lengthy and difficult process and assuring optimal information retrieval.
引用
收藏
页码:2562 / 2564
页数:3
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