Simultaneous runs of the Bayer VERSANT HIV-1 version 3.0 and HCV bDNA version 3.0 quantitative assays on the system 340 platform provide reliable quantitation and improved work flow

被引:27
作者
Elbeik, T
Markowitz, N
Nassos, P
Kumar, U
Beringer, S
Haller, B
Ng, V
机构
[1] San Francisco Gen Hosp, Dept Lab Med, Clin Lab, San Francisco, CA 94110 USA
[2] Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94143 USA
[3] Profess Habitat Design LLC, San Francisco, CA USA
[4] Henry Ford Hosp, Div Infect Dis, Detroit, MI USA
关键词
D O I
10.1128/JCM.42.7.3120-3127.2004
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Branched DNA (bDNA) assays to quantify human immunodeficiency virus type I (HIV-1) and hepatitis C virus (HCV) consist of three distinct steps, including sample processing, hybridization, and detection, and utilize the System 340 platform for plate incubation and washing. Sample processing differs: HIV-1 from 1 ml of plasma is concentrated by high-speed centrifugation, whereas HCV plasma or serum samples are used without concentration. The first step of hybridization involves viral lysis at 63degreesC: HIV-1 is performed in a heat block, whereas HCV is performed in System 340. The remaining hybridization and detection steps are similar for HIV-1 and HCV and executed on System 340. In the present study, the HIV-1 bDNA assay was adapted for viral lysis in the System 340 platform. The adaptation, test method 2, includes a 20-s vortex of concentrated viral pellet and lysis working solution, transfer of viral lysate to the 96-well capture plate, and transfer to System 340 programmed for HCV assay specifications. With test method 2, specificity and quantification were within assay specifications. HCV bDNA methodology remains unchanged. Hence, an HIV-1 and an HCV bDNA can be run simultaneously on System 340. With simultaneous testing, laboratories can run full plates, as well as combinations of full and partial plates. Also, simultaneous HIV-1 and HCV bDNA permits labor consolidation and improved workflow while maintaining multitasking and rapid patient result turnaround.
引用
收藏
页码:3120 / 3127
页数:8
相关论文
共 14 条
[1]   Comparative evaluation of the QUANTIPLEX HIV-1 RNA 2.0 and 3.0 (bDNA) assays and the AMPLICOR HIV-1 MONITOR v1.5 test for the quantitation of human immunodeficiency virus type 1 RNA in plasma [J].
Anastassopoulou, CG ;
Toulomi, G ;
Katsoulidou, A ;
Hatzitheodorou, H ;
Pappa, M ;
Paraskevis, D ;
Lazanas, M ;
Gargalianos, P ;
Hatzakis, A .
JOURNAL OF VIROLOGICAL METHODS, 2001, 91 (01) :67-74
[2]  
BOYER JL, 2002, NAT I HLTH CONSENSUS
[3]   ProbeDesigner for the design of probesets for branched DNA (bDNA) signal amplification assays [J].
Bushnell, S ;
Budde, J ;
Catino, T ;
Cole, J ;
Derti, A ;
Kelso, R ;
Collins, ML ;
Molino, G ;
Sheridan, P ;
Monahan, J ;
Urdea, M .
BIOINFORMATICS, 1999, 15 (05) :348-355
[4]   A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml [J].
Collins, ML ;
Irvine, B ;
Tyner, D ;
Fine, E ;
Zayati, C ;
Chang, CA ;
Horn, T ;
Ahle, D ;
Detmer, J ;
Shen, LP ;
Kolberg, J ;
Bushnell, S ;
Urdea, MS ;
Ho, DD .
NUCLEIC ACIDS RESEARCH, 1997, 25 (15) :2979-2984
[5]  
Elbeik T, 2002, J ACQ IMMUN DEF SYND, V29, P330
[6]  
Elbeik Tarek, 2002, Expert Rev Mol Diagn, V2, P275, DOI 10.1586/14737159.2.3.275
[7]  
ELBEIK TR, 2003, EXPERT REV PHARMACOE, V3, P83
[8]  
FAUCHI AS, 2002, GUIDELINES USE ANTIR
[9]  
Fleiss J. L., 1981, Statistical Methods for Rates and Proportions, V2nd
[10]   Multicenter evaluation of the Bayer VERSANT™ HIV-1 RNA 3.0 assay:: analytical and clinical performance [J].
Gleaves, CA ;
Welle, J ;
Campbell, M ;
Elbeik, T ;
Ng, V ;
Taylor, PE ;
Kuramoto, K ;
Aceituno, S ;
Lewalski, E ;
Joppa, B ;
Sawyer, L ;
Schaper, C ;
McNairn, D ;
Quinn, T .
JOURNAL OF CLINICAL VIROLOGY, 2002, 25 (02) :205-216