共 79 条
Structure-based virtual screening: an overview
被引:510
作者:

Lyne, PD
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca R&D Boston, Waltham, MA 02451 USA AstraZeneca R&D Boston, Waltham, MA 02451 USA
机构:
[1] AstraZeneca R&D Boston, Waltham, MA 02451 USA
关键词:
D O I:
10.1016/S1359-6446(02)02483-2
中图分类号:
R9 [药学];
学科分类号:
1007 ;
摘要:
Enormous advances in genomics have resulted in a large increase in the number of potential therapeutic targets that are available for investigation. This growth in potential targets has increased the demand for reliable target validation, as well as technologies that can identify rapidly several quality lead candidates. Virtual screening, and in particular receptor-based virtual screening, has emerged as a reliable, inexpensive method for identifying leads. Although still an evolving method, advances in computational techniques have enabled virtual screening to have a positive impact on the discovery process. Here, the current strengths and weaknesses of the technology are discussed, and emphasis is placed on aspects of the work-flow of a virtual screening campaign, from preparation through to post-screening analysis.
引用
收藏
页码:1047 / 1055
页数:9
相关论文
共 79 条
[31]
High-throughput screening: new technology for the 21st century
[J].
Hertzberg, RP
;
Pope, AJ
.
CURRENT OPINION IN CHEMICAL BIOLOGY,
2000, 4 (04)
:445-451

Hertzberg, RP
论文数: 0 引用数: 0
h-index: 0
机构: SmithKline Beecham Pharmaceut, Mol Screening Technol, King Of Prussia, PA 19406 USA

Pope, AJ
论文数: 0 引用数: 0
h-index: 0
机构: SmithKline Beecham Pharmaceut, Mol Screening Technol, King Of Prussia, PA 19406 USA
[32]
CLASSICAL ELECTROSTATICS IN BIOLOGY AND CHEMISTRY
[J].
HONIG, B
;
NICHOLLS, A
.
SCIENCE,
1995, 268 (5214)
:1144-1149

HONIG, B
论文数: 0 引用数: 0
h-index: 0
机构: Department of Biochemistry and Molecular Biophysics, Columbia University, New York

NICHOLLS, A
论文数: 0 引用数: 0
h-index: 0
机构: Department of Biochemistry and Molecular Biophysics, Columbia University, New York
[33]
Errors in protein structures
[J].
Hooft, RWW
;
Vriend, G
;
Sander, C
;
Abola, EE
.
NATURE,
1996, 381 (6580)
:272-272

Hooft, RWW
论文数: 0 引用数: 0
h-index: 0
机构: EMBL EBI,CAMBRIDGE CB10 1RQ,ENGLAND

Vriend, G
论文数: 0 引用数: 0
h-index: 0
机构: EMBL EBI,CAMBRIDGE CB10 1RQ,ENGLAND

Sander, C
论文数: 0 引用数: 0
h-index: 0
机构: EMBL EBI,CAMBRIDGE CB10 1RQ,ENGLAND

Abola, EE
论文数: 0 引用数: 0
h-index: 0
机构: EMBL EBI,CAMBRIDGE CB10 1RQ,ENGLAND
[34]
Inhibitors of kinesin activity from structure-based computer screening
[J].
Hopkins, SC
;
Vale, RD
;
Kuntz, ID
.
BIOCHEMISTRY,
2000, 39 (10)
:2805-2814

Hopkins, SC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA

Vale, RD
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA

Kuntz, ID
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
[35]
SMall molecule growth 2001 (SMoG2001): An improved knowledge-based scoring function for protein-ligand interactions
[J].
Ishchenko, AV
;
Shakhnovich, EI
.
JOURNAL OF MEDICINAL CHEMISTRY,
2002, 45 (13)
:2770-2780

Ishchenko, AV
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Shakhnovich, EI
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[36]
MOLECULAR RECOGNITION OF RECEPTOR-SITES USING A GENETIC ALGORITHM WITH A DESCRIPTION OF DESOLVATION
[J].
JONES, G
;
WILLETT, P
;
GLEN, RC
.
JOURNAL OF MOLECULAR BIOLOGY,
1995, 245 (01)
:43-53

JONES, G
论文数: 0 引用数: 0
h-index: 0
机构: WELLCOME RES LABS,DEPT PHYS SCI,BECKENHAM BR3 3BS,KENT,ENGLAND

WILLETT, P
论文数: 0 引用数: 0
h-index: 0
机构: WELLCOME RES LABS,DEPT PHYS SCI,BECKENHAM BR3 3BS,KENT,ENGLAND

GLEN, RC
论文数: 0 引用数: 0
h-index: 0
机构: WELLCOME RES LABS,DEPT PHYS SCI,BECKENHAM BR3 3BS,KENT,ENGLAND
[37]
FLEXIBASES - A WAY TO ENHANCE THE USE OF MOLECULAR DOCKING METHODS
[J].
KEARSLEY, SK
;
UNDERWOOD, DJ
;
SHERIDAN, RP
;
MILLER, MD
.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN,
1994, 8 (05)
:565-582

KEARSLEY, SK
论文数: 0 引用数: 0
h-index: 0
机构:
MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486 MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486

UNDERWOOD, DJ
论文数: 0 引用数: 0
h-index: 0
机构:
MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486 MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486

SHERIDAN, RP
论文数: 0 引用数: 0
h-index: 0
机构:
MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486 MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486

MILLER, MD
论文数: 0 引用数: 0
h-index: 0
机构:
MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486 MERCK SHARP & DOHME LTD,RES LABS,DEPT MOLEC SYST,W POINT,PA 19486
[38]
Molecular docking to ensembles of protein structures
[J].
Knegtel, RMA
;
Kuntz, ID
;
Oshiro, CM
.
JOURNAL OF MOLECULAR BIOLOGY,
1997, 266 (02)
:424-440

Knegtel, RMA
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV CALIF SAN FRANCISCO,SCH PHARM,DEPT PHARMACEUT CHEM,SAN FRANCISCO,CA 94143 UNIV CALIF SAN FRANCISCO,SCH PHARM,DEPT PHARMACEUT CHEM,SAN FRANCISCO,CA 94143

Kuntz, ID
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV CALIF SAN FRANCISCO,SCH PHARM,DEPT PHARMACEUT CHEM,SAN FRANCISCO,CA 94143 UNIV CALIF SAN FRANCISCO,SCH PHARM,DEPT PHARMACEUT CHEM,SAN FRANCISCO,CA 94143

Oshiro, CM
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV CALIF SAN FRANCISCO,SCH PHARM,DEPT PHARMACEUT CHEM,SAN FRANCISCO,CA 94143 UNIV CALIF SAN FRANCISCO,SCH PHARM,DEPT PHARMACEUT CHEM,SAN FRANCISCO,CA 94143
[39]
FREE-ENERGY CALCULATIONS - APPLICATIONS TO CHEMICAL AND BIOCHEMICAL PHENOMENA
[J].
KOLLMAN, P
.
CHEMICAL REVIEWS,
1993, 93 (07)
:2395-2417

KOLLMAN, P
论文数: 0 引用数: 0
h-index: 0
机构: Department of Pharmaceutical Chemistry, University of California, San Francisco
[40]
RATIONAL DESIGN OF POTENT, BIOAVAILABLE, NONPEPTIDE CYCLIC UREAS AS HIV PROTEASE INHIBITORS
[J].
LAM, PYS
;
JADHAV, PK
;
EYERMANN, CJ
;
HODGE, CN
;
RU, Y
;
BACHELER, LT
;
MEEK, JL
;
OTTO, MJ
;
RAYNER, MM
;
WONG, YN
;
CHANG, CH
;
WEBER, PC
;
JACKSON, DA
;
SHARPE, TR
;
ERICKSONVIITANEN, S
.
SCIENCE,
1994, 263 (5145)
:380-384

LAM, PYS
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

JADHAV, PK
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

EYERMANN, CJ
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

HODGE, CN
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

RU, Y
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

BACHELER, LT
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

MEEK, JL
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

OTTO, MJ
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

RAYNER, MM
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

WONG, YN
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

CHANG, CH
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

WEBER, PC
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

JACKSON, DA
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

SHARPE, TR
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA

ERICKSONVIITANEN, S
论文数: 0 引用数: 0
h-index: 0
机构:
DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA DUPONT MERCK PHARMACEUT CO, DEPT CHEM & PHYS SCI, WILMINGTON, DE 19880 USA