Evaluating the Potential for Halogen Bonding in the Oxyanion Hole of Ketosteroid Isomerase Using Unnatural Amino Acid Mutagenesis
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作者:
Kraut, Daniel A.
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Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Kraut, Daniel A.
[1
]
Churchill, Michael J.
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Scripps Res Inst, Skaggs Inst Chem Biol, Dept Cell Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, Dept Chem, La Jolla, CA 92037 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Churchill, Michael J.
[2
,3
]
Dawson, Phillip E.
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Scripps Res Inst, Skaggs Inst Chem Biol, Dept Cell Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, Dept Chem, La Jolla, CA 92037 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Dawson, Phillip E.
[2
,3
]
Herschlag, Daniel
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Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Herschlag, Daniel
[1
]
机构:
[1] Stanford Univ, Dept Biochem, Stanford, CA 94305 USA
[2] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Cell Biol, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Chem, La Jolla, CA 92037 USA
There has recently been an increasing interest in controlling macromolecular conformations and interactions through halogen bonding. Halogen bonds are favorable electrostatic interactions between polarized, electropositive chlorine, bromine, or iodine atoms and electronegative atoms such as oxygen or nitrogen. These interactions have been likened to hydrogen bonds in terms of their favored acceptor molecules, their geometries, and their energetics. We asked whether a halogen bond could replace a hydrogen bond in the oxyanion hole of ketosteroid isomerase, using semisynthetic enzymes containing para-halogenated phenylatanine derivatives to replace the tyrosine hydrogen bond donor. Formation of a halogen bond to the oxyanion in the transition state would be expected to rescue the effects of mutation to phenylalanine, but all of the halogenated enzymes were comparable in activity to the phenylalanine mutant. We conclude that, at least in this active site, a halogen bond cannot functionally replace a hydrogen bond.
机构:
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Sigala, Paul A.
;
Kraut, Daniel A.
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Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Kraut, Daniel A.
;
Caaveiro, Jose M. M.
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Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Caaveiro, Jose M. M.
;
Pybus, Brandon
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机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Pybus, Brandon
;
Ruben, Eliza A.
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Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Ruben, Eliza A.
;
Ringe, Dagmar
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机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Ringe, Dagmar
;
Petsko, Gregory A.
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机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Petsko, Gregory A.
;
Herschlag, Daniel
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Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
机构:
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Sigala, Paul A.
;
Kraut, Daniel A.
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h-index: 0
机构:
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Kraut, Daniel A.
;
Caaveiro, Jose M. M.
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h-index: 0
机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Caaveiro, Jose M. M.
;
Pybus, Brandon
论文数: 0引用数: 0
h-index: 0
机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Pybus, Brandon
;
Ruben, Eliza A.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Ruben, Eliza A.
;
Ringe, Dagmar
论文数: 0引用数: 0
h-index: 0
机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Ringe, Dagmar
;
Petsko, Gregory A.
论文数: 0引用数: 0
h-index: 0
机构:
Brandeis Univ, Dept Biochem, Waltham, MA 02454 USA
Brandeis Univ, Dept Chem, Waltham, MA 02454 USA
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Waltham, MA 02454 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA
Petsko, Gregory A.
;
Herschlag, Daniel
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Biochem, Stanford, CA 94305 USA