System, trends and perspectives of proteomics in dicot plants Part I: Technologies in proteome establishment

被引:42
作者
Agrawal, GK
Yonekura, M
Iwahashi, Y
Iwahashi, H
Rakwal, R
机构
[1] RLABB, Kathmandu, Nepal
[2] Ibaraki Univ, Sch Agr, Food Funct Lab, Ami, Ibaraki 3000393, Japan
[3] NFRI, Tsukuba, Ibaraki 3058642, Japan
[4] AIST, HSS Res Ctr, Tsukuba, Ibaraki 3058566, Japan
来源
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES | 2005年 / 815卷 / 1-2期
关键词
dicotyledoneous plants; sample preparation; techniques; 2-DGE; MS; protein identification; bioinformatics;
D O I
10.1016/j.jchromb.2004.11.024
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The first 3 years of the 21st century have seen the impact of plant proteomics on functional genomics that has enhanced our understanding, not only on the plant genome(s), but also more importantly, on the functional aspect of proteins. This is mainly due to availability of the complete genome sequence of the Arabidopsis thaliana-a dicotyledoneous (dicot) model plant-and technological advancements in proteomics. Proteomic analyses of a variety of dicot plants, including both Arabidopsis and the model legume species, barrel medic (Medicago truncatula), have greatly helped in an efficient separation, identification and cataloguing of a large number of proteins, and thereby defining their proteomes. Therefore, we have composed an inclusive review on dicot plant materials, as of February 2004, that provides system, trends and perspectives of proteomics in growth and development and the environment. The review is summarized and discussed as three individual, but interlinked, entities: Part 1, technologies in proteome establishment (this review), Part 11, proteomes of the complex developmental stages [G.K. Agrawal, M. Yonekura, Y. Iwahashi, H. Iwahashi, R. Rakwal, J. Chromatogr. B (2004)], and Part III, unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationships [G.K. Agrawal, M. Yonekura, Y. Iwahashi, H. Iwahashi, R. Rakwal, J. Chromatogr. B (2004)]. This review deals with the diverse proteomic technologies being used in proteome development of different dicot plants. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:109 / 123
页数:15
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