Conserved noncoding sequences are reliable guides to regulatory elements

被引:336
作者
Hardison, RC [1 ]
机构
[1] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
关键词
D O I
10.1016/S0168-9525(00)02081-3
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A 'working draft' of the human genome sequence is now available. Comparisons with the sequences of mouse and other species will be a powerful approach to identifying functional segments of the noncoding regions, such as gene regulatory elements. However, the choice of a species for most effective comparison differs among various loci.
引用
收藏
页码:369 / 372
页数:4
相关论文
共 22 条
[11]   Locus control regions of mammalian β-globin gene clusters:: combining phylogenetic analyses and experimental results to gain functional insights [J].
Hardison, R ;
Slightom, JL ;
Gumucio, DL ;
Goodman, M ;
Stojanovic, N ;
Miller, W .
GENE, 1997, 205 (1-2) :73-94
[12]   Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome [J].
Hardison, RC ;
Oeltjen, J ;
Miller, W .
GENOME RESEARCH, 1997, 7 (10) :959-966
[13]   Hox cluster genomics in the horn shark, Heterodontus francisci [J].
Kim, CB ;
Amemiya, C ;
Bailey, W ;
Kawasaki, K ;
Mezey, J ;
Miller, W ;
Minoshima, S ;
Shimizu, N ;
Wagner, G ;
Ruddle, F .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (04) :1655-1660
[14]   STRIKING SEQUENCE SIMILARITY OVER ALMOST 100 KILOBASES OF HUMAN AND MOUSE T-CELL RECEPTOR DNA [J].
KOOP, BF ;
HOOD, L .
NATURE GENETICS, 1994, 7 (01) :48-53
[15]   The new genomics: Global views of biology [J].
Lander, ES .
SCIENCE, 1996, 274 (5287) :536-539
[16]   Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons [J].
Loots, GG ;
Locksley, RM ;
Blakespoor, CM ;
Wang, ZE ;
Miller, W ;
Rubin, EM ;
Frazer, KA .
SCIENCE, 2000, 288 (5463) :136-140
[17]   Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2 [J].
Lund, J ;
Chen, F ;
Hua, A ;
Roe, B ;
Budarf, M ;
Emanuel, BS ;
Reeves, RH .
GENOMICS, 2000, 63 (03) :374-383
[18]   So many genomes, so little time [J].
Miller, W .
NATURE BIOTECHNOLOGY, 2000, 18 (02) :148-149
[19]   NUCLEOTIDE-SEQUENCE OF AN RNA-POLYMERASE BINDING-SITE AT AN EARLY T7 PROMOTER [J].
PRIBNOW, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1975, 72 (03) :784-788
[20]   PipMaker - A Web server for aligning two genomic DNA sequences [J].
Schwartz, S ;
Zhang, Z ;
Frazer, KA ;
Smit, A ;
Riemer, C ;
Bouck, J ;
Gibbs, R ;
Hardison, R ;
Miller, W .
GENOME RESEARCH, 2000, 10 (04) :577-586