RAD marker microarrays enable rapid mapping of zebrafish mutations

被引:44
作者
Miller, Michael R.
Atwood, Tressa S.
Eames, B. Frank
Eberhart, Johann K.
Yan, Yi-Lin
Postlethwait, John H.
Johnson, Eric A.
机构
[1] Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USA
[2] Univ Oregon, Inst Neurosci, Eugene, OR 97403 USA
[3] FloraGenex Inc, Eugene, OR 97403 USA
关键词
D O I
10.1186/gb-2007-8-6-r105
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We constructed a restriction site associated DNA ( RAD) marker microarray to facilitate rapid genetic mapping of zebrafish mutations. Using these microarrays with a bulk segregant approach, we localized previously unmapped mutations to genomic regions just a few centiMorgans in length. Furthermore, we developed an approach to assay individual RAD markers in pooled populations and refined one region. The RAD approach is highly effective for genetic mapping in zebrafish and is an attractive option for mapping in other organisms.
引用
收藏
页数:10
相关论文
共 25 条
[21]   Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays [J].
Stickney, HL ;
Schmutz, J ;
Woods, IG ;
Holtzer, CC ;
Dickson, MC ;
Kelly, PD ;
Myers, RM ;
Talbot, WS .
GENOME RESEARCH, 2002, 12 (12) :1929-1934
[22]   PRODUCTION OF CLONES OF HOMOZYGOUS DIPLOID ZEBRA FISH (BRACHYDANIO-RERIO) [J].
STREISINGER, G ;
WALKER, C ;
DOWER, N ;
KNAUBER, D ;
SINGER, F .
NATURE, 1981, 291 (5813) :293-296
[23]   Zebrafish furin mutants reveal intricacies in regulating Endothelin1 signaling in craniofacial patterning [J].
Walker, Macie B. ;
Miller, Craig T. ;
Talbot, Jared Coffin ;
Stock, David W. ;
Kimmel, Charles B. .
DEVELOPMENTAL BIOLOGY, 2006, 295 (01) :194-205
[24]   The zebrafish gene map defines ancestral vertebrate chromosomes [J].
Woods, IG ;
Wilson, C ;
Friedlander, B ;
Chang, P ;
Reyes, DK ;
Nix, R ;
Kelly, PD ;
Chu, F ;
Postlethwait, JH ;
Talbot, WS .
GENOME RESEARCH, 2005, 15 (09) :1307-1314
[25]   Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription [J].
Zilberman, Daniel ;
Gehring, Mary ;
Tran, Robert K. ;
Ballinger, Tracy ;
Henikoff, Steven .
NATURE GENETICS, 2007, 39 (01) :61-69