BamView: viewing mapped read alignment data in the context of the reference sequence

被引：58

作者：

Carver, Tim ^{[1
]}

Bohme, Ulrike ^{[1
]}

Otto, Thomas D. ^{[1
]}

Parkhill, Julian ^{[1
]}

Berriman, Matthew ^{[1
]}

机构：

[1] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England

来源：

BIOINFORMATICS | 2010年 / 26卷 / 05期

基金：

英国惠康基金;

关键词：

D O I：

10.1093/bioinformatics/btq010

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

BamView is an interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. It supports the BAM (Binary Alignment/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features.

引用

页码：676 / 677

页数：2

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