Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR)

被引:1044
作者
Kroh, Evan M. [1 ]
Parkin, Rachael K. [1 ]
Mitchell, Patrick S. [1 ]
Tewari, Muneesh [1 ,2 ,3 ]
机构
[1] Fred Hutchinson Canc Res Ctr, Human Biol Div, Seattle, WA 98104 USA
[2] Fred Hutchinson Canc Res Ctr, Div Clin Res, Seattle, WA 98104 USA
[3] Fred Hutchinson Canc Res Ctr, Div Publ Hlth Sci, Seattle, WA 98104 USA
关键词
microRNA; Biomarker; Circulating; qRT-PCR; miRNA; QUANTIFICATION;
D O I
10.1016/j.ymeth.2010.01.032
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
MicroRNAs (miRNAs) are small (similar to 22 nt) RNAs that play important roles in gene regulatory networks by binding to and repressing the activity of specific target mRNAs. Recent studies have indicated that miRNAs circulate in a stable, cell-free form in the bloodstream and that the abundance of specific miRNAs in plasma or serum can serve as biomarkers of cancer and other diseases. Measurement of circulating miRNAs as biomarkers is associated with some special challenges, including those related to pre-analytic variation and data normalization. We describe here our procedure for qRT-PCR analysis of circulating miRNAs as biomarkers, and discuss relevant issues of sample preparation, experimental design and data analysis. (C) 2010 Elsevier Inc. All rights reserved.
引用
收藏
页码:298 / 301
页数:4
相关论文
共 11 条
[1]   Origins and Mechanisms of miRNAs and siRNAs [J].
Carthew, Richard W. ;
Sontheimer, Erik J. .
CELL, 2009, 136 (04) :642-655
[2]   Real-time quantification of microRNAs by stem-loop RT-PCR [J].
Chen, CF ;
Ridzon, DA ;
Broomer, AJ ;
Zhou, ZH ;
Lee, DH ;
Nguyen, JT ;
Barbisin, M ;
Xu, NL ;
Mahuvakar, VR ;
Andersen, MR ;
Lao, KQ ;
Livak, KJ ;
Guegler, KJ .
NUCLEIC ACIDS RESEARCH, 2005, 33 (20) :e179.1-e179.9
[3]   Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases [J].
Chen, Xi ;
Ba, Yi ;
Ma, Lijia ;
Cai, Xing ;
Yin, Yuan ;
Wang, Kehui ;
Guo, Jigang ;
Zhang, Yujing ;
Chen, Jiangning ;
Guo, Xing ;
Li, Qibin ;
Li, Xiaoying ;
Wang, Wenjing ;
Zhang, Yan ;
Wang, Jin ;
Jiang, Xueyuan ;
Xiang, Yang ;
Xu, Chen ;
Zheng, Pingping ;
Zhang, Juanbin ;
Li, Ruiqiang ;
Zhang, Hongjie ;
Shang, Xiaobin ;
Gong, Ting ;
Ning, Guang ;
Wang, Jun ;
Zen, Ke ;
Zhang, Junfeng ;
Zhang, Chen-Yu .
CELL RESEARCH, 2008, 18 (10) :997-1006
[4]   Detection and characterization of placental MicroRNAs in maternal plasma [J].
Chim, Stephen S. C. ;
Shing, Tristan K. F. ;
Hung, Emily C. W. ;
Leung, Tak-yeung ;
Lau, Tze-kin ;
Chiu, Rossa W. K. ;
Lo, Y. M. Dennis .
CLINICAL CHEMISTRY, 2008, 54 (03) :482-490
[5]   Serum MicroRNAs Are Promising Novel Biomarkers [J].
Gilad, Shlomit ;
Meiri, Eti ;
Yogev, Yariv ;
Benjamin, Sima ;
Lebanony, Danit ;
Yerushalmi, Noga ;
Benjamin, Hila ;
Kushnir, Michal ;
Cholakh, Hila ;
Melamed, Nir ;
Bentwich, Zvi ;
Hod, Moshe ;
Goren, Yaron ;
Chajut, Ayelet .
PLOS ONE, 2008, 3 (09)
[6]   Detection of microRNA Expression in Human Peripheral Blood Microvesicles [J].
Hunter, Melissa Piper ;
Ismail, Noura ;
Zhang, Xiaoli ;
Aguda, Baltazar D. ;
Lee, Eun Joo ;
Yu, Lianbo ;
Xiao, Tao ;
Schafer, Jeffrey ;
Lee, Mei-Ling Ting ;
Schmittgen, Thomas D. ;
Nana-Sinkam, S. Patrick ;
Jarjoura, David ;
Marsh, Clay B. .
PLOS ONE, 2008, 3 (11)
[7]   Detection of elevated levels of tumour-associated microRNAs in serum of patients with diffuse large B-cell lymphoma [J].
Lawrie, Charles H. ;
Gal, Shira ;
Dunlop, Heather M. ;
Pushkaran, Beena ;
Liggins, Amanda P. ;
Pulford, Karen ;
Banham, Alison H. ;
Pezzella, Francesco ;
Boultwood, Jacqueline ;
Wainscoat, James S. ;
Hatton, Christian S. R. ;
Harris, Adrian L. .
BRITISH JOURNAL OF HAEMATOLOGY, 2008, 141 (05) :672-675
[8]   Circulating microRNAs as stable blood-based markers for cancer detection [J].
Mitchell, Patrick S. ;
Parkin, Rachael K. ;
Kroh, Evan M. ;
Fritz, Brian R. ;
Wyman, Stacia K. ;
Pogosova-Agadjanyan, Era L. ;
Peterson, Amelia ;
Noteboom, Jennifer ;
O'Briant, Kathy C. ;
Allen, April ;
Lin, Daniel W. ;
Urban, Nicole ;
Drescher, Charles W. ;
Knudsen, Beatrice S. ;
Stirewalt, Derek L. ;
Gentleman, Robert ;
Vessella, Robert L. ;
Nelson, Peter S. ;
Martin, Daniel B. ;
Tewari, Muneesh .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (30) :10513-10518
[9]   Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs [J].
Raymond, CK ;
Roberts, BS ;
Garrett-Engele, P ;
Lim, LP ;
Johnson, JM .
RNA, 2005, 11 (11) :1737-1744
[10]   Real-time PCR quantification of precursor and mature microRNA [J].
Schmittgen, Thomas D. ;
Lee, Eun Joo ;
Jiang, Jinmai ;
Sarkar, Anasuya ;
Yang, Liuqing ;
Elton, Terry S. ;
Chen, Caifu .
METHODS, 2008, 44 (01) :31-38