Contribution of Radiation Hybrids to Genome Mapping in Domestic Animals

被引：15

作者：

Faraut, T. ^{[1
]}

de Givry, S. ^{[1
]}

Hitte, C. ^{[2
]}

Lahbib-Mansais, Y. ^{[1
]}

Morisson, M. ^{[1
]}

Milan, D. ^{[1
]}

Schiex, T. ^{[1
]}

Servin, B. ^{[1
]}

Vignal, A. ^{[1
]}

Galibert, F. ^{[2
]}

Yerle, M. ^{[1
]}

机构：

[1] INRA, Lab Genet Cellulaire & Biometrie & Intelligence A, F-31326 Castanet Tolosan, France

[2] Univ Rennes, Inst Genet & Dev Rennes, Rennes, France

来源：

CYTOGENETIC AND GENOME RESEARCH | 2009年 / 126卷 / 1-2期

关键词：

Comparative mapping; Domestic animals; Genome maps; Radiation hybrid maps; Radiation hybrid panel; PORCINE SOMATIC-CELL; RESOLUTION COMPARATIVE MAP; RH MAP; REDUCED REPRESENTATION; STATISTICAL-METHODS; CHICK ERYTHROCYTES; HUMAN-CHROMOSOMES; FRAMEWORK MAP; SNP DISCOVERY; PHYSICAL MAP;

D O I：

10.1159/000245904

中图分类号：

Q2 [细胞生物学];

学科分类号：

071009 ; 090102 ;

摘要：

Radiation hybrid mapping has emerged in the end of the 1990s as a successful and complementary approach to map genomes, essentially because of its ability to bridge the gaps between genetic and clone-based physical maps, but also using comparative mapping approaches, between 'generich' and 'gene-poor' maps. Since its early development in human, radiation hybrid mapping played a pivotal role in the process of mapping animal genomes, especially mammalian ones. We review here all the different steps involved in radiation hybrid mapping from the constitution of panels to the construction of maps. A description of its contribution to whole genome maps with a special emphasis on domestic animals will also be presented. Finally, current applications of radiation hybrid mapping in the context of whole genome assemblies will be described. Copyright (C) 2009 S. Karger AG, Basel

引用

页码：21 / 33

页数：13

共 131 条

[71] MULTIPOINT RADIATION HYBRID MAPPING - COMPARISON OF METHODS, SAMPLE-SIZE REQUIREMENTS, AND OPTIMAL STUDY CHARACTERISTICS [J].

LUNETTA, KL ;

BOEHNKE, M .

GENOMICS, 1994, 21 (01) :92-103

[72]

Lunetta KL, 1996, AM J HUM GENET, V59, P717

[73] Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes [J].

Lyons, LA ;

Laughlin, TF ;

Copeland, NG ;

Jenkins, NA ;

Womack, JE ;

OBrien, SJ .

NATURE GENETICS, 1997, 15 (01) :47-56

[74] A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly [J].

Marques, Elisa ;

de Givry, Simon ;

Stothard, Paul ;

Murdoch, Brenda ;

Wang, Zhiquan ;

Womack, James ;

Moore, Stephen S. .

BMC GENOMICS, 2007, 8

[75] Assessment of AFLP® marker behaviour in enriching STS radiation hybrid maps [J].

Marsan, P. Ajmone ;

Gorni, C. ;

Milanesi, E. ;

Mazza, R. ;

van Eijk, M. J. T. ;

Peleman, J. D. ;

Williams, J. L. .

ANIMAL GENETICS, 2008, 39 (04) :383-394

[76] A whole-genome radiation hybrid panel and framework map of the rat genome [J].

McCarthy, LC ;

Bihoreau, MT ;

Kiguwa, SL ;

Browne, J ;

Watanabe, TK ;

Hishigaki, H ;

Tsuji, A ;

Kiel, S ;

Webber, C ;

Davis, ME ;

Knights, C ;

Smith, A ;

Critcher, R ;

Huxtall, P ;

Hudson, JR ;

Ono, T ;

Hayashi, H ;

Takagi, T ;

Nakamura, Y ;

Tanigami, A ;

Goodfellow, PN ;

Lathrop, GM ;

James, MR .

MAMMALIAN GENOME, 2000, 11 (09) :791-795

[77] Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping [J].

McKay, S. D. ;

Schnabel, R. D. ;

Murdoch, B. M. ;

Aerts, J. ;

Gill, C. A. ;

Gao, C. ;

Li, C. ;

Matukumalli, L. K. ;

Stothard, P. ;

Wang, Z. ;

Van Tassell, C. P. ;

Williams, J. L. ;

Taylor, J. F. ;

Moore, S. S. .

ANIMAL GENETICS, 2007, 38 (02) :120-125

[78]

MCKUSICK VA, 1984, CLIN GENET, V25, P89

[79] Piggy-BACing the human genome - II. A high-resolution, physically anchored, comparative map of the porcine autosomes [J].

Meyers, SN ;

Rogatcheva, MB ;

Larkin, DM ;

Yerle, M ;

Milan, D ;

Hawken, RJ ;

Schook, LB ;

Beever, JE .

GENOMICS, 2005, 86 (06) :739-+

[80] IMpRH Server: an RH mapping server available on the Web [J].

Milan, D ;

Hawken, R ;

Cabau, C ;

Leroux, S ;

Genet, C ;

Lahbib, Y ;

Tosser, G ;

Robic, A ;

Hatey, F ;

Alexander, L ;

Beattie, C ;

Schook, L ;

Yerle, M ;

Gellin, J .

BIOINFORMATICS, 2000, 16 (06) :558-559

← 3 4 5 6 7 8 9 10 11 12 →